YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: gi|20260206, gi|...

General Information:
Name(s) found: gi|25347957 [NCBI NR]
gi|21593725 [NCBI NR]
gi|21387041 [NCBI NR]
gi|20260206 [NCBI NR]
gi|15222534 [NCBI NR]
gi|12325007 [NCBI NR]
gi|12324948 [NCBI NR]
Description(s) found:
Found 18 descriptions.
SHOW ALL
  • pir||H96662 hypothetical protein T12P18.20 [imported] - Arabidopsis thaliana [NCBI NR]
  • gi|21593725|gb|AAM65692.1| putative U3 small nucleolar ribonucleoprotein [Arabidopsis thaliana] [NCBI NR]
  • gi|21387041|gb|AAM47924.1| putative U3 small nucleolar ribonucleoprotein protein [Arabidopsis thaliana] [NCBI NR]
  • gi|20260206|gb|AAM13001.1| putative U3 small nucleolar ribonucleoprotein protein [Arabidopsis thaliana] [NCBI NR]
  • gi|15222534|ref|NP_176564.1| IMP4 [Arabidopsis thaliana] [NCBI NR]
  • gi|12325007|gb|AAG52449.1|AC010852_6 putative U3 small nucleolar ribonucleoprotein protein; 73469-75667 [Arabidopsis thaliana] [NCBI NR]
  • gi|12324948|gb|AAG52427.1|AC011622_15 putative U3 small nucleolar ribonucleoprotein protein; 1537-3735 [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 294 amino acids

    Gene Ontology:
    Cellular Component: Cajal body [TAS]
    nuclear matrix [IDA]
    nucleolus [TAS]
    small nucleolar ribonucleoprotein complex [TAS]
    Biological Process: rRNA processing [TAS]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQRRLVRLKK EYIYRKSLEG DERKVYEQKR LIREALQEGK PIPTELRNVE AKLRQEIDLE  60
   61 DQNTAVPRSH IDDEYANATE ADPKILLTTS RNPSAPLIRF TKELKFVFPN SQRINRGSQV 120
  121 ISEIIETARS HDFTDVILVH EHRGVPDGLI ISHLPFGPTA YFGLLNVVTR HDISDKKSIG 180
  181 KMPEQYPHLI FNNFTTQMGQ RVGNILKHIF PAPKLDAKRI VTFSNQSDYI SFRNHVYDKG 240
  241 EGGPKSIELK EIGPRFELRL YQVKLGTVEQ NEAEIEWVIR PYMNTSKKRK FIGE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..62] MSA 2.133996 View MSA. Confident ab initio structure predictions are available.
    2 View Details [63..183] PSI-BLAST 15.154902 Crystal structure of probable ribosomal biogenesis protein from Aeropyrum pernix K1
    3 View Details [184..294] FFAS03 1.74 Crystal structure of probable ribosomal biogenesis protein from Aeropyrum pernix K1

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • aminoacyl-tRNA ligase activity
    		•  3.58650371779212 bayes_pls_golite062009
  • ligase activity, forming carbon-oxygen bonds
    		•  3.58624422951947 bayes_pls_golite062009
  • ligase activity, forming aminoacyl-tRNA and related compounds
    		•  3.58624422951947 bayes_pls_golite062009
  • ligase activity
    		•  2.71574082295198 bayes_pls_golite062009
  • proline-tRNA ligase activity
    		•  2.35871952544841 bayes_pls_golite062009
  • binding
    		•  1.73857064375258 bayes_pls_golite062009
  • catalytic activity
    		•  0.902495165806215 bayes_pls_golite062009
  • protein binding
    		•  0.358563180490135 bayes_pls_golite062009
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle