YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|9656499, gi\|1...
Organism:	Vibrio cholerae O1 biovar El Tor str. N16961
Length:	276 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|9656499, gi|1....

Description	E-value	Query Range	Subject Range
gi\|75827274 - gi\|75827274\|ref\|ZP_00756709.1\| COG2894: Septum formation inhibitor-activating ATPase [Vibrio cholera... gi\|229529016, gi... - gi\|229529016\|ref\|ZP_04418406.1\| septum site-determining protein MinD [Vibrio cholerae 12129(1)], gi\|... gi\|75830768, gi\|... - gi\|75830768\|ref\|ZP_00760040.1\| COG2894: Septum formation inhibitor-activating ATPase [Vibrio cholera... gi\|75815065 - gi\|75815065\|ref\|ZP_00745593.1\| COG2894: Septum formation inhibitor-activating ATPase [Vibrio cholera... gi\|75818634, gi\|... - gi\|75818634\|ref\|ZP_00748771.1\| COG2894: Septum formation inhibitor-activating ATPase [Vibrio cholera... tr\|A0A086SPV0\|A0... - Site-determining protein OS=Vibrio cholerae GN=minD PE=3 SV=1	228.0	[0..7]	[276..1]
gi\|90438964, gi\|... - gi\|90580079\|ref\|ZP_01235887.1\| putative septum site-determining protein MinD [Vibrio angustum S14], ...	227.0	[0..7]	[276..1]
gi\|149745909, gi... - gi\|153840427\|ref\|ZP_01993094.1\| septum site-determining protein MinD [Vibrio parahaemolyticus AQ3810... gi\|28805860, gi\|... - gi\|28897647\|ref\|NP_797252.1\| septum site-determining protein MinD [Vibrio parahaemolyticus RIMD 2210... gi\|28805860 - gi\|28805860\|dbj\|BAC59136.1\| septum site-determining protein MinD [Vibrio parahaemolyticus RIMD 22106...	225.0	[0..7]	[276..1]
gi\|37526053, gi\|... - gi\|37526053\|ref\|NP_929397.1\| cell division inhibitor MinD [Photorhabdus luminescens subsp. laumondii...	224.0	[0..7]	[276..1]
gi\|89075744, gi\|... - gi\|89075744\|ref\|ZP_01162132.1\| putative septum site-determining protein MinD [Photobacterium sp. SKA...	223.0	[0..7]	[276..1]
gi\|59712312, gi\|... - gi\|59712312\|ref\|YP_205088.1\| membrane ATPase of the MinC-MinD-MinE system [Vibrio fischeri ES114], g...	223.0	[0..7]	[276..1]
gi\|37197983, gi\|... - gi\|37679240\|ref\|NP_933849.1\| septum formation inhibitor-activating ATPase [Vibrio vulnificus YJ016],...	223.0	[0..7]	[276..1]
gi\|85059313, gi\|... - gi\|85059313\|ref\|YP_455015.1\| cell division inhibitor MinD [Sodalis glossinidius str. 'morsitans'], g...	223.0	[0..7]	[276..1]
gi\|229702266, gi... - gi\|229894793\|ref\|ZP_04509973.1\| septum site-determining protein [Yersinia pestis Pestoides A], gi\|22... gi\|229897498, gi... - gi\|229897498\|ref\|ZP_04512654.1\| septum site-determining protein [Yersinia pestis biovar Orientalis s... gi\|77635433, gi\|... - gi\|77635433\|ref\|ZP_00797518.1\| COG2894: Septum formation inhibitor-activating ATPase [Yersinia pesti... gi\|229898142, gi... - gi\|229898142\|ref\|ZP_04513291.1\| septum site-determining protein [Yersinia pestis biovar Orientalis s... gi\|153950682, gi... - gi\|77629143\|ref\|ZP_00791729.1\| COG2894: Septum formation inhibitor-activating ATPase [Yersinia pseud... gi\|108807456, gi... - gi\|108807456\|ref\|YP_651372.1\| cell division inhibitor MinD [Yersinia pestis Antiqua], gi\|108779369\|g... gi\|108811717, gi... - gi\|229902004\|ref\|ZP_04517125.1\| septum site-determining protein [Yersinia pestis Nepal516], gi\|22968... Q66AS0\|Q66AS0_YERPS - Septum site-determining protein - Yersinia pseudotuberculosis gi\|167419960, gi... - gi\|167419960\|ref\|ZP_02311713.1\| septum site-determining protein MinD [Yersinia pestis biovar Orienta... gi\|167056357, gi... - gi\|167424475\|ref\|ZP_02316228.1\| septum site-determining protein MinD [Yersinia pestis biovar Mediaev... gi\|170024356, gi... - gi\|170024356\|ref\|YP_001720861.1\| cell division inhibitor MinD [Yersinia pseudotuberculosis YPIII], g... gi\|186895429, gi... - gi\|186895429\|ref\|YP_001872541.1\| cell division inhibitor MinD [Yersinia pseudotuberculosis PB1/+], g... gi\|149365994, gi... - gi\|149365994\|ref\|ZP_01888029.1\| septum site-determining protein [Yersinia pestis CA88-4125], gi\|1492... gi\|145598341, gi... - gi\|145598341\|ref\|YP_001162417.1\| cell division inhibitor MinD [Yersinia pestis Pestoides F], gi\|1452... gi\|21959078, gi\|... - gi\|22126119\|ref\|NP_669542.1\| cell division inhibitor MinD [Yersinia pestis KIM], gi\|21959078\|gb\|AAM8... gi\|25300127 - pir\|\|AE0253 septum site-determining protein [imported] - Yersinia pestis (strain CO92) gi\|51589668, gi\|... - gi\|51596386\|ref\|YP_070577.1\| cell division inhibitor MinD [Yersinia pseudotuberculosis IP 32953], gi... gi\|45441722, gi\|... - gi\|45441722\|ref\|NP_993261.1\| cell division inhibitor MinD [Yersinia pestis biovar Microtus str. 9100... gi\|165919622, gi... - gi\|165928339\|ref\|ZP_02224171.1\| septum site-determining protein MinD [Yersinia pestis biovar Orienta... gi\|165938851, gi... - gi\|165938851\|ref\|ZP_02227405.1\| septum site-determining protein MinD [Yersinia pestis biovar Orienta... gi\|218929184, gi... - gi\|218929184\|ref\|YP_002347059.1\| cell division inhibitor MinD [Yersinia pestis CO92], gi\|16122316\|re... gi\|165991941, gi... - gi\|166009386\|ref\|ZP_02230284.1\| septum site-determining protein MinD [Yersinia pestis biovar Antiqua... gi\|166208082, gi... - gi\|166210902\|ref\|ZP_02236937.1\| septum site-determining protein MinD [Yersinia pestis biovar Antiqua... gi\|167401456, gi... - gi\|167401456\|ref\|ZP_02306953.1\| septum site-determining protein MinD [Yersinia pestis biovar Antiqua...	223.0	[0..7]	[276..1]
gi\|50121297, gi\|... - gi\|50121297\|ref\|YP_050464.1\| cell division inhibitor MinD [Pectobacterium atrosepticum SCRI1043], gi...	222.0	[0..7]	[276..1]

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Predicted Domain #1

Region A:
Residues: [1-276]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKGKNNMSRI IVVTSGKGGV GKTTSSAAIA SGLALRGKKT AVIDFDIGLR NLDLIMGCER  60
   61 RVVYDFVNVI NGEATLNQAL IKDKRNENLF ILPASQTRDK DALTKDGVQR VLNDLKEMGF 120
  121 DFIICDSPAG IEQGALMALY YADEAIVTTN PEVSSVRDSD RILGILDSKS MRAEQGQAPI 180
  181 KQHLLLTRYN PARVTQGEML SVQDVEEILH VPLLGVIPES QAVLNASNKG VPVIFDDQSD 240
  241 AGQAYQDTVA RLLGEQVEFR FLTEAKKGIF KRLFGG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	35.09691
Match:	1g3qA
Description:	Cell division regulator MinD
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
nucleoside-triphosphatase activity	2.50267116518023	bayes_pls_golite062009
pyrophosphatase activity	2.42957469111629	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides	2.40943522107938	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	2.40733363368781	bayes_pls_golite062009
binding	1.8576045268999	bayes_pls_golite062009
hydrolase activity	1.10968068468793	bayes_pls_golite062009
catalytic activity	0.458437698837681	bayes_pls_golite062009
protein binding	0.378225828131122	bayes_pls_golite062009
nucleotide binding	0.0601614967638421	bayes_pls_golite062009
purine nucleotide binding	0.0518926528648858	bayes_pls_golite062009
purine ribonucleotide binding	0.0231586743339878	bayes_pls_golite062009
ribonucleotide binding	0.0231035204040646	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: