YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|33146582, gi|...
Organism: Oryza sativa Japonica Group
Length: 324 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|33146582, gi|....

Description E-value Query
Range
Subject
Range
gi|20259906, gi|... - gi|20259906|gb|AAM13300.1| unknown protein [Arabidopsis thaliana], gi|17064866|gb|AAL32587.1| Unknow...
407.0 [0..1] [324..153]

Back

Predicted Domain #1
Region A:
Residues: [1-324]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLPEGLPAGM MKEFQETRRC AVMVRESFLD LRDNFRRIVD PAIAAKRKDA KRQIVLDGPR  60
   61 SCGKSIALAM LVHWARTEGW LVFYVPQGKD WSHGGFFYRN TYNDLFDTPI QAAKILQDFL 120
  121 KYNENRLQQL PCQIFEPIPL GEGAGVGMMK GADTVEMPEG STLYDLIQTG ITHSHASVGV 180
  181 VVRLRKELSL VKDVPVLFAI DQYNSWFTFS EFQEPVTVRS CRPIHAKELT MVNVYRPMLH 240
  241 NDMMVGAFSH STAVGKLRQD LPDVPSDARV MFPRYTVNEA ETVCHYYMRQ KIIKRENFSE 300
  301 EKWKKIYYLS NGNGSEMRWL AAFI

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.3
Match: 2fnaA
Description: Crystal structure of (13814777) from SULFOLOBUS SOLFATARICUS at 2.00 A resolution
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 2.15223415484989 bayes_pls_golite062009
nucleoside-triphosphatase activity 1.34493968116428 bayes_pls_golite062009
pyrophosphatase activity 1.27725136877368 bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides 1.25622959106807 bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 1.25605166511461 bayes_pls_golite062009
protein binding 1.25232424749674 bayes_pls_golite062009
motor activity 0.294261683163235 bayes_pls_golite062009
nucleic acid binding 0.16654890833655 bayes_pls_golite062009
nucleotide binding 0.0805813265856811 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle