YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30260238, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	124 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30260238, gi|....

Description	E-value	Query Range	Subject Range
gi\|3257265, gi\|1... - gi\|3257265\|dbj\|BAA29948.1\| 137aa long hypothetical protein [Pyrococcus horikoshii OT3], gi\|14590714\|... gi\|7444996 - gi\|7444996\|pir\|\|B71136 hypothetical protein PH0854 - Pyrococcus horikoshii	1.0E-45	[2..124]	[14..137]
Y854_PYRHO - UPF0076 protein PH0854 OS=Pyrococcus horikoshii GN=PH0854 PE=1 SV=2 Y854_PYRHO - RutC family protein PH0854 OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBR...	2.0E-45	[2..124]	[3..126]
RIDA_PYRFU - 2-iminobutanoate/2-iminopropanoate deaminase OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / ...	2.0E-44	[2..124]	[3..126]
gi\|89211378, gi\|... - gi\|89211378\|ref\|ZP_01189746.1\| YjgF-like protein [Halothermothrix orenii H 168], gi\|89159023\|gb\|EAR7...	2.0E-43	[4..123]	[6..125]
Y1251_PYRAB, YC5... - (Q9UZA3) Hypothetical UPF0076 protein PYRAB12510, UPF0076 protein PYRAB12510 OS=Pyrococcus abyssi GN... Y1251_PYRAB - RutC family protein PYRAB12510 OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=PYRAB12510 PE=3 SV=1	2.0E-43	[2..124]	[4..127]
gi\|56378418, gi\|... - gi\|56418576\|ref\|YP_145894.1\| translation initiation inhibitor [Geobacillus kaustophilus HTA426], gi\|... gi\|221088012, gi... - gi\|221088012\|ref\|ZP_03557546.1\| endoribonuclease L-PSP [Geobacillus sp. Y412MC61], gi\|220708005\|gb\|E... gi\|229329342, gi... - gi\|229499758\|ref\|ZP_04393438.1\| endoribonuclease L-PSP [Geobacillus sp. Y412MC52], gi\|229329342\|gb\|E...	5.0E-43	[1..123]	[1..123]
gi\|74492900, gi\|... - gi\|75759609\|ref\|ZP_00739695.1\| Translation initiation inhibitor [Bacillus thuringiensis serovar isra...	9.0E-43	[1..124]	[4..127]
gi\|34482639 - gi\|34482639\|emb\|CAE09639.1\| TRANSLATION INITIATION INHIBITOR [Wolinella succinogenes] gi\|34556924 - gi\|34556924\|ref\|NP_906739.1\| translation initiation inhibitor [Wolinella succinogenes DSM 1740]	1.0E-42	[1..121]	[1..121]
gi\|89149750, gi\|... - gi\|89202233\|ref\|ZP_01180961.1\| YjgF-like protein [Bacillus cereus subsp. cytotoxis NVH 391-98], gi\|8...	3.0E-42	[1..124]	[1..124]
gi\|25303224 - pir\|\|G83657 translation initiation inhibitor BH0063 [imported] - Bacillus halodurans (strain C-125) gi\|10172675, gi\|... - gi\|15612626\|ref\|NP_240929.1\| translation initiation inhibitor [Bacillus halodurans C-125], gi\|101726...	3.0E-42	[1..124]	[1..124]

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Predicted Domain #1

Region A:
Residues: [1-124]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKVVQTNNAP QAIGPYSQGI IVNNMFYSSG QIPLTASGEL VAGDVTVQTE QVFQNLQAVL  60
   61 EEAGASFDTV VKTTVFLKDM DDFNAVNEVY GSYFSAHKPA RSCVQVAKLP KDVSVEIEVI 120
  121 ALVK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	43.221849
Match:	1qd9A
Description:	Purine regulatory protein YabJ
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
ribonuclease activity	5.19435575508494	bayes_pls_golite062009
endoribonuclease activity	3.76425533948565	bayes_pls_golite062009
endonuclease activity	3.57078287701774	bayes_pls_golite062009
nuclease activity	1.95684086528131	bayes_pls_golite062009
hydrolase activity, acting on ester bonds	1.90373737530073	bayes_pls_golite062009
binding	1.87868720745411	bayes_pls_golite062009
hydrolase activity	1.86428296839828	bayes_pls_golite062009
catalytic activity	1.00848565859536	bayes_pls_golite062009
protein binding	0.378484263251583	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: