YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30255238, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	107 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30255238, gi|....

Description	E-value	Query Range	Subject Range
gi\|74491853, gi\|... - gi\|75760672\|ref\|ZP_00740699.1\| SinR protein [Bacillus thuringiensis serovar israelensis ATCC 35646],...	9.0E-21	[1..107]	[8..114]
gi\|9858108 - gi\|9858108\|gb\|AAG00996.1\|AF287346_1 regulator SinR [Bacillus thuringiensis]	2.0E-20	[1..107]	[1..107]
gi\|47556719, gi\|... - gi\|47566166\|ref\|ZP_00237194.1\| SinR protein [Bacillus cereus G9241], gi\|47556719\|gb\|EAL15050.1\| SinR... gi\|228984453, gi... - gi\|228984453\|ref\|ZP_04144631.1\| HTH-type transcriptional regulator sinR [Bacillus thuringiensis sero... gi\|228587826, gi... - gi\|229195577\|ref\|ZP_04322343.1\| HTH-type transcriptional regulator sinR [Bacillus cereus m1293], gi\|... gi\|228628505, gi... - gi\|229154947\|ref\|ZP_04283061.1\| HTH-type transcriptional regulator sinR [Bacillus cereus ATCC 4342],...	4.0E-20	[1..107]	[1..107]
gi\|42780467, gi\|... - gi\|42780467\|ref\|NP_977714.1\| transcriptional regulator SinR [Bacillus cereus ATCC 10987], gi\|4273638...	5.0E-20	[1..107]	[1..107]
gi\|228726212, gi... - gi\|229043120\|ref\|ZP_04190847.1\| HTH-type transcriptional regulator sinR [Bacillus cereus AH676], gi\|... gi\|228951761, gi... - gi\|228951761\|ref\|ZP_04113860.1\| HTH-type transcriptional regulator sinR [Bacillus thuringiensis sero... gi\|228920093, gi... - gi\|228920093\|ref\|ZP_04083442.1\| HTH-type transcriptional regulator sinR [Bacillus thuringiensis sero... gi\|206967979, gi... - gi\|206967979\|ref\|ZP_03228935.1\| transcriptional regulator SinR [Bacillus cereus AH1134], gi\|20673689... gi\|228639382, gi... - gi\|229143985\|ref\|ZP_04272401.1\| HTH-type transcriptional regulator sinR [Bacillus cereus BDRD-ST24],... gi\|229126696, gi... - gi\|229126696\|ref\|ZP_04255708.1\| HTH-type transcriptional regulator sinR [Bacillus cereus BDRD-Cer4],... gi\|228704709, gi... - gi\|229078565\|ref\|ZP_04211123.1\| HTH-type transcriptional regulator sinR [Bacillus cereus Rock4-2], g... gi\|229068931, gi... - gi\|229068931\|ref\|ZP_04202225.1\| HTH-type transcriptional regulator sinR [Bacillus cereus F65185], gi... gi\|29894977, gi\|... - gi\|30019433\|ref\|NP_831064.1\| SinR protein [Bacillus cereus ATCC 14579], gi\|29894977\|gb\|AAP08265.1\| S... gi\|229177788, gi... - gi\|229177788\|ref\|ZP_04305161.1\| HTH-type transcriptional regulator sinR [Bacillus cereus 172560W], g...	5.0E-20	[1..107]	[1..107]
gi\|228750633, gi... - gi\|229010668\|ref\|ZP_04167868.1\| HTH-type transcriptional regulator sinR [Bacillus mycoides DSM 2048]... gi\|89157553, gi\|... - gi\|89204492\|ref\|ZP_01183069.1\| Helix-turn-helix motif [Bacillus weihenstephanensis KBAB4], gi\|891575... gi\|229132174, gi... - gi\|229132174\|ref\|ZP_04261032.1\| HTH-type transcriptional regulator sinR [Bacillus cereus BDRD-ST196]...	1.0E-19	[1..106]	[1..106]
gi\|152974807, gi... - gi\|89200949\|ref\|ZP_01179698.1\| Helix-turn-helix motif [Bacillus cereus subsp. cytotoxis NVH 391-98],...	2.0E-19	[1..107]	[1..107]
gi\|52080997, gi\|... - gi\|52080997\|ref\|YP_079788.1\| transcriptional regulator [Bacillus licheniformis ATCC 14580], gi\|52004...	7.0E-17	[1..107]	[1..109]
SINR_BACLI - HTH-type transcriptional regulator SinR OS=Bacillus licheniformis GN=sinR PE=3 SV=1	9.0E-17	[1..107]	[1..109]

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Predicted Domain #1

Region A:
Residues: [1-107]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIGERIKRLR LQKGISLTEL AEKAGVAKSY ISSIERNLQK NPSIQFLEKI AAVLQIPVDT  60
   61 LLHDETTKEA NLDSEWTQLV KDAMNSGVSK EQFREFLEFT KWKQNQK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	18.0
Match:	1b0nA
Description:	SinR repressor dimerisation domain; SinR repressor, DNA-binding domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
DNA binding	3.85002031997592	bayes_pls_golite062009
nucleic acid binding	3.75841546996198	bayes_pls_golite062009
transcription regulator activity	3.48897156115814	bayes_pls_golite062009
transcription factor activity	2.36423264873787	bayes_pls_golite062009
binding	2.32539337034365	bayes_pls_golite062009
catalytic activity	0.374904657353081	bayes_pls_golite062009
RNA polymerase II transcription factor activity	0.29966985317584	bayes_pls_golite062009
sequence-specific DNA binding	0.20324889750334	bayes_pls_golite062009
transcription repressor activity	0.0485771867742395	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: