YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30255439, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	428 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30255439, gi|....

Description	E-value	Query Range	Subject Range
gi\|74489342, gi\|... - gi\|75763175\|ref\|ZP_00742943.1\| NAD-specific glutamate dehydrogenase [Bacillus thuringiensis serovar ... gi\|218233867, gi... - gi\|218233867\|ref\|YP_002366271.1\| glutamate dehydrogenase, NAD-specific [Bacillus cereus B4264], gi\|2... gi\|218540950, gi... - gi\|218896519\|ref\|YP_002444930.1\| glutamate dehydrogenase, NAD-specific [Bacillus cereus G9842], gi\|2... gi\|206970567, gi... - gi\|206970567\|ref\|ZP_03231519.1\| glutamate dehydrogenase, NAD-specific [Bacillus cereus AH1134], gi\|2... gi\|228900170, gi... - gi\|228900170\|ref\|ZP_04064402.1\| Glutamate dehydrogenase [Bacillus thuringiensis IBL 4222], gi\|228859... gi\|228920300, gi... - gi\|228920300\|ref\|ZP_04083647.1\| Glutamate dehydrogenase [Bacillus thuringiensis serovar huazhongensi... gi\|228852442, gi... - gi\|228907221\|ref\|ZP_04071082.1\| Glutamate dehydrogenase [Bacillus thuringiensis IBL 200], gi\|2288524... gi\|228957866, gi... - gi\|228957866\|ref\|ZP_04119606.1\| Glutamate dehydrogenase [Bacillus thuringiensis serovar pakistani st... gi\|228807692, gi... - gi\|228951967\|ref\|ZP_04114064.1\| Glutamate dehydrogenase [Bacillus thuringiensis serovar kurstaki str... gi\|229043335, gi... - gi\|229043335\|ref\|ZP_04191053.1\| Glutamate dehydrogenase [Bacillus cereus AH676], gi\|228725983\|gb\|EEL... gi\|228795099, gi... - gi\|228964565\|ref\|ZP_04125674.1\| Glutamate dehydrogenase [Bacillus thuringiensis serovar sotto str. T... gi\|228704454, gi... - gi\|229078772\|ref\|ZP_04211325.1\| Glutamate dehydrogenase [Bacillus cereus Rock4-2], gi\|228704454\|gb\|E... gi\|229069143, gi... - gi\|229069143\|ref\|ZP_04202434.1\| Glutamate dehydrogenase [Bacillus cereus F65185], gi\|228713895\|gb\|EE... gi\|228656504, gi... - gi\|229126904\|ref\|ZP_04255915.1\| Glutamate dehydrogenase [Bacillus cereus BDRD-Cer4], gi\|228656504\|gb... gi\|229109045, gi... - gi\|229109045\|ref\|ZP_04238645.1\| Glutamate dehydrogenase [Bacillus cereus Rock1-15], gi\|228674323\|gb\|... gi\|228633652, gi... - gi\|229149788\|ref\|ZP_04278017.1\| Glutamate dehydrogenase [Bacillus cereus m1550], gi\|228633652\|gb\|EEK... gi\|229144189, gi... - gi\|229144189\|ref\|ZP_04272603.1\| Glutamate dehydrogenase [Bacillus cereus BDRD-ST24], gi\|228639197\|gb... gi\|229189672, gi... - gi\|229189672\|ref\|ZP_04316686.1\| Glutamate dehydrogenase [Bacillus cereus ATCC 10876], gi\|228593721\|g... gi\|229177997, gi... - gi\|229177997\|ref\|ZP_04305369.1\| Glutamate dehydrogenase [Bacillus cereus 172560W], gi\|228605485\|gb\|E...	0.0	[1..428]	[1..428]
gi\|222095220, gi... - gi\|222095220\|ref\|YP_002529280.1\| glutamate dehydrogenase [Bacillus cereus Q1], gi\|221239278\|gb\|ACM11... gi\|217959066, gi... - gi\|217959066\|ref\|YP_002337614.1\| glutamate dehydrogenase, NAD-specific [Bacillus cereus AH187], gi\|2... gi\|47552786, gi\|... - gi\|47570542\|ref\|ZP_00241167.1\| NAD-specific glutamate dehydrog [Bacillus cereus G9241], gi\|47552786\|... gi\|229138284, gi... - gi\|229138284\|ref\|ZP_04266879.1\| Glutamate dehydrogenase [Bacillus cereus BDRD-ST26], gi\|228645176\|gb... gi\|42780691, gi\|... - gi\|42780691\|ref\|NP_977938.1\| glutamate dehydrogenase [Bacillus cereus ATCC 10987], gi\|42736611\|gb\|AA... gi\|228984669, gi... - gi\|228984669\|ref\|ZP_04144842.1\| Glutamate dehydrogenase [Bacillus thuringiensis serovar tochigiensis... gi\|228587688, gi... - gi\|229195791\|ref\|ZP_04322551.1\| Glutamate dehydrogenase [Bacillus cereus m1293], gi\|228587688\|gb\|EEK... gi\|229155157, gi... - gi\|229155157\|ref\|ZP_04283269.1\| Glutamate dehydrogenase [Bacillus cereus ATCC 4342], gi\|228628284\|gb...	0.0	[1..428]	[1..428]
gi\|48859402, gi\|... - gi\|67875162\|ref\|ZP_00504647.1\| Glutamate dehydrogenase (NADP+) [Clostridium thermocellum ATCC 27405]...	0.0	[1..427]	[11..444]
gi\|220708858, gi... - gi\|221087208\|ref\|ZP_03556747.1\| Glu/Leu/Phe/Val dehydrogenase [Geobacillus sp. Y412MC61], gi\|2207088... gi\|56420770, gi\|... - gi\|56420770\|ref\|YP_148088.1\| NAD-specific glutamate dehydrogenase (NAD-GDH) [Geobacillus kaustophilu... gi\|229331536, gi... - gi\|229497658\|ref\|ZP_04391358.1\| Glu/Leu/Phe/Val dehydrogenase [Geobacillus sp. Y412MC52], gi\|2293315...	0.0	[1..428]	[1..423]
gi\|227557041, gi... - gi\|227557041\|ref\|ZP_03987088.1\| glutamate dehydrogenase [Staphylococcus aureus subsp. aureus MN8], g... gi\|147740461, gi... - gi\|148267392\|ref\|YP_001246335.1\| Glu/Leu/Phe/Val dehydrogenase, C terminal [Staphylococcus aureus su... gi\|227899104, gi... - gi\|227899104\|ref\|ZP_04016909.1\| glutamate dehydrogenase [Staphylococcus aureus subsp. aureus TCH60],... gi\|151221040, gi... - gi\|151221040\|ref\|YP_001331862.1\| NAD-specific glutamate dehydrogenase [Staphylococcus aureus subsp. ... gi\|251813854, gi... - gi\|251813854\|ref\|ZP_04828327.1\| glutamate dehydrogenase [Staphylococcus aureus subsp. aureus TCH70],... gi\|253731565, gi... - gi\|253731565\|ref\|ZP_04865730.1\| glutamate dehydrogenase [Staphylococcus aureus subsp. aureus USA300_... gi\|253729298, gi... - gi\|253732687\|ref\|ZP_04866852.1\| glutamate dehydrogenase [Staphylococcus aureus subsp. aureus TCH130]... gi\|150393445, gi... - gi\|90583838\|ref\|ZP_01239588.1\| Glu/Leu/Phe/Val dehydrogenase, C terminal:Glu/Leu/Phe/Val dehydrogena...	0.0	[1..427]	[1..427]
gi\|23099265, gi\|... - gi\|23099265\|ref\|NP_692731.1\| glutamate dehydrogenase [Oceanobacillus iheyensis HTE831], gi\|22777494\|...	0.0	[1..428]	[1..426]
gi\|72495998, gi\|... - gi\|73663483\|ref\|YP_302264.1\| NAD-specific glutamate dehydrogenase [Staphylococcus saprophyticus subs...	0.0	[15..427]	[1..413]
gi\|68346947, gi\|... - gi\|70732648\|ref\|YP_262411.1\| glutamate dehydrogenase [Pseudomonas fluorescens Pf-5], gi\|68346947\|gb\|...	0.0	[1..428]	[35..468]
gi\|70726993, gi\|... - gi\|70726993\|ref\|YP_253907.1\| NAD-specific glutamate dehydrogenase [Staphylococcus haemolyticus JCSC1...	0.0	[14..427]	[2..415]
gi\|107099749 - gi\|107099749\|ref\|ZP_01363667.1\| hypothetical protein PaerPA_01000767 [Pseudomonas aeruginosa PACS2] gi\|254238668, gi... - gi\|84317187\|ref\|ZP_00965641.1\| COG0334: Glutamate dehydrogenase/leucine dehydrogenase [Pseudomonas a...	0.0	[1..428]	[12..445]

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Predicted Domain #1

Region A:
Residues: [1-428]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVAEKGTQTK TQQQREQHFE LLNSTQIVIS EALEKLGYPN EVYELLKEPI RMMTVKIPVR  60
   61 MDDGTVKIFT GYRAQHNDAV GPTKGGIRFH PNVTENEVKA LSIWMSLKCG IVDLPYGGGK 120
  121 GGIICDPREM SFRELERLSR GYVRAISQIV GPTKDIPAPD VFTNSQIMAW MMDEYSRIDE 180
  181 FNSPGFITGK PLVLGGSHGR ETATAKGVTI CIREAAKKRD IDIKGARVVV QGFGNAGSFL 240
  241 AKFMHDAGAK VIAISDAYGA LHDPNGLDID YLLDRRDSFG TVTKLFNNTI SNKELLELDC 300
  301 DILVPAAIEN QITEENANDI KAKIVVEAAN GPTTLEATKI LTDRGILLVP DVLASAGGVT 360
  361 VSYFEWVQNN QGYYWTEEEV EQRLEKVMVR SFDSIYETAQ VRKVNMRLAA YMVGVRKMAE 420
  421 ASRFRGWV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	124.0
Match:	1euzA
Description:	Glutamate dehydrogenase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
glutamate dehydrogenase (NADP+) activity	4.50065200228697	bayes_pls_golite062009
oxidoreductase activity	3.09625241707629	bayes_pls_golite062009
oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor	2.00319512154556	bayes_pls_golite062009
catalytic activity	1.79741889688267	bayes_pls_golite062009
oxidoreductase activity, acting on CH-OH group of donors	1.65338499044318	bayes_pls_golite062009
DNA binding	1.61355789916908	bayes_pls_golite062009
transcription regulator activity	1.55390653047158	bayes_pls_golite062009
nucleic acid binding	1.48478425318425	bayes_pls_golite062009
oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	1.47309297191111	bayes_pls_golite062009
malic enzyme activity	1.39067036188188	bayes_pls_golite062009
glutamate dehydrogenase [NAD(P)+] activity	0.994926158034199	bayes_pls_golite062009
binding	0.982999356179965	bayes_pls_golite062009
transcription factor activity	0.91090893050278	bayes_pls_golite062009
coenzyme binding	0.35922330382799	bayes_pls_golite062009
structural molecule activity	0.345975336806588	bayes_pls_golite062009
NAD or NADH binding	0.0664389065992004	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: