YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30261693, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	128 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30261693, gi|....

Description	E-value	Query Range	Subject Range
gi\|228957973, gi... - gi\|228957973\|ref\|ZP_04119710.1\| hypothetical protein bthur0005_14840 [Bacillus thuringiensis serovar... gi\|228807608, gi... - gi\|228952076\|ref\|ZP_04114171.1\| hypothetical protein bthur0006_14870 [Bacillus thuringiensis serovar... gi\|29895289, gi\|... - gi\|30019744\|ref\|NP_831375.1\| ribonuclease H [Bacillus cereus ATCC 14579], gi\|29895289\|gb\|AAP08576.1\|... gi\|206734396, gi... - gi\|206970760\|ref\|ZP_03231712.1\| RNase H [Bacillus cereus AH1134], gi\|206734396\|gb\|EDZ51566.1\| RNase ... gi\|229109152, gi... - gi\|229109152\|ref\|ZP_04238751.1\| hypothetical protein bcere0018_14230 [Bacillus cereus Rock1-15], gi\|... gi\|218233881, gi... - gi\|218233881\|ref\|YP_002366379.1\| RNase H [Bacillus cereus B4264], gi\|218161838\|gb\|ACK61830.1\| RNase ... gi\|229078879, gi... - gi\|229078879\|ref\|ZP_04211431.1\| hypothetical protein bcere0023_15410 [Bacillus cereus Rock4-2], gi\|2... gi\|229069249, gi... - gi\|229069249\|ref\|ZP_04202539.1\| hypothetical protein bcere0025_14540 [Bacillus cereus F65185], gi\|22... gi\|228725828, gi... - gi\|229043450\|ref\|ZP_04191160.1\| hypothetical protein bcere0027_14980 [Bacillus cereus AH676], gi\|228... gi\|228639096, gi... - gi\|229144309\|ref\|ZP_04272715.1\| hypothetical protein bcere0012_14700 [Bacillus cereus BDRD-ST24], gi... gi\|228656376, gi... - gi\|229127023\|ref\|ZP_04256022.1\| hypothetical protein bcere0015_14780 [Bacillus cereus BDRD-Cer4], gi...	6.0E-33	[1..128]	[1..128]
gi\|218541202, gi... - gi\|218896627\|ref\|YP_002445038.1\| RNase H [Bacillus cereus G9842], gi\|218541202\|gb\|ACK93596.1\| RNase ... gi\|228859312, gi... - gi\|228900277\|ref\|ZP_04064507.1\| hypothetical protein bthur0014_14830 [Bacillus thuringiensis IBL 422... gi\|228964678, gi... - gi\|228964678\|ref\|ZP_04125785.1\| hypothetical protein bthur0004_15220 [Bacillus thuringiensis serovar... gi\|228820657, gi... - gi\|228938808\|ref\|ZP_04101408.1\| hypothetical protein bthur0008_14690 [Bacillus thuringiensis serovar... gi\|228781315, gi... - gi\|228978298\|ref\|ZP_04138675.1\| hypothetical protein bthur0002_15020 [Bacillus thuringiensis Bt407],... gi\|228971689, gi... - gi\|228971689\|ref\|ZP_04132310.1\| hypothetical protein bthur0003_14660 [Bacillus thuringiensis serovar... gi\|74492835, gi\|... - gi\|75759688\|ref\|ZP_00739771.1\| Ribonuclease HI / Cell wall enzyme EBSB [Bacillus thuringiensis sero...	6.0E-33	[1..128]	[1..128]
gi\|42780788, gi\|... - gi\|42780788\|ref\|NP_978035.1\| ribonuclease H [Bacillus cereus ATCC 10987], gi\|42736708\|gb\|AAS40643.1\|...	5.0E-32	[1..128]	[1..128]
gi\|47566073, gi\|... - gi\|47566073\|ref\|ZP_00237111.1\| RNase H [Bacillus cereus G9241], gi\|47556990\|gb\|EAL15320.1\| RNase H [...	7.0E-32	[1..128]	[1..128]
gi\|228750181, gi... - gi\|229011009\|ref\|ZP_04168203.1\| hypothetical protein bmyco0001_14610 [Bacillus mycoides DSM 2048], g... gi\|229166532, gi... - gi\|229166532\|ref\|ZP_04294285.1\| hypothetical protein bcere0007_15040 [Bacillus cereus AH621], gi\|228... gi\|228719998, gi... - gi\|229058324\|ref\|ZP_04196709.1\| hypothetical protein bcere0026_14370 [Bacillus cereus AH603], gi\|228... gi\|89204877, gi\|... - gi\|89204877\|ref\|ZP_01183452.1\| Ribonuclease H [Bacillus weihenstephanensis KBAB4], gi\|89157174\|gb\|EA...	7.0E-32	[1..128]	[1..128]
gi\|152975120, gi... - gi\|89201054\|ref\|ZP_01179802.1\| Ribonuclease H [Bacillus cereus subsp. cytotoxis NVH 391-98], gi\|8915...	4.0E-31	[1..128]	[1..128]
gi\|110288766 - gi\|110288766\|gb\|AAP52584.2\| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa (jap...	4.0E-30	[2..127]	[1231..1357]
gi\|116309132 - gi\|116309132\|emb\|CAH66235.1\| H0825G02.12 [Oryza sativa (indica cultivar-group)]	4.0E-30	[2..127]	[668..794]

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Predicted Domain #1

Region A:
Residues: [1-128]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIEVYIDGAS KGNPGPSGAG VFIKGVQPAV QLSLPLGTMS NHEAEYHALL AALKYCTEHN  60
   61 YNIVSFRTDS QLVERAVEKE YAKNKMFAPL LEEALQYIKS FDLFFIKWIP SSQNKVADEL 120
  121 ARKAILQN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	29.522879
Match:	1goaA
Description:	COOPERATIVE STABILIZATION OF ESCHERICHIA COLI RIBONUCLEASE HI BY INSERTION OF GLY-80B AND GLY-77-> ALA SUBSTITUTION
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
ribonuclease activity	3.91517707500372	bayes_pls_golite062009
endoribonuclease activity	3.00008907756136	bayes_pls_golite062009
ribonuclease H activity	2.37346218921366	bayes_pls_golite062009
hydrolase activity	2.30893115816458	bayes_pls_golite062009
hydrolase activity, acting on ester bonds	2.26022264830742	bayes_pls_golite062009
nuclease activity	1.81796593394339	bayes_pls_golite062009
endonuclease activity	1.79009816048707	bayes_pls_golite062009
catalytic activity	1.62277843225829	bayes_pls_golite062009
exoribonuclease activity	1.48827607538468	bayes_pls_golite062009
exoribonuclease activity, producing 5'-phosphomonoesters	1.34153791988846	bayes_pls_golite062009
3'-5'-exoribonuclease activity	0.8085201347205	bayes_pls_golite062009
exonuclease activity	0.39213900591465	bayes_pls_golite062009
endoribonuclease activity, producing 5'-phosphomonoesters	0.13187450705887	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: