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Protein Overview: gi|110288766

General Information:
Name(s) found: gi|110288766 [NCBI NR]
Description(s) found:
Found 2 descriptions.
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  • gi|110288766|gb|AAP52584.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa (japonica cultivar-group)] [NCBI NR]
    • Organism: Oryza sativa Japonica Group
    Length: 1486 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVTAGDQRRD GAAAERAERR GKRKRRSSAH PGSTATTGTA AEAEESGGAV RDGEDDGAPA  60
   61 VGGRNEGADE VDDDAAKPME DYGSSTTSAP REVLAIDGVG TSAQANAEAA NQSTTPAQHI 120
  121 RAVQAILRET PYDPVLNDDL KCWIERLRES MTNLSNAFEE AATAAHQDQP RIGDANGEDP 180
  181 EQRELPRQAT PPPRGTGDLR DQINGRRKAR RTRDDANRSR RHVSSRRHDR GNRPNEDRDY 240
  241 NDREQRGPDN TGHGRRRNDD DDGDRRRDNS ERQREDSRDP GHHPRNRTLE PSDPSSSSSS 300
  301 ASSSSSDRHP RRSRDRRQPT APNAGCRAFG RSLRDVRWPE RFRPRAIKKY DGSTDPEEFL 360
  361 QVYSTVLYAA GADDNALANY LPTALKGSAR SWLMHLPPYS ISSWADLWQQ FVANFQGTYK 420
  421 HHAIEDDLHA LTQNSGESLR EYVRRFNECR NTIPEITDSS VIRTFKSGVR DRYTTQELPT 480
  481 RRITTTRRLF EIVERKNDKP KTGGEKKPAA DASESSKKKN HKNRKRKAQA EVLAAEYANP 540
  541 PKRPDPQGSD TKKSWCPIHK TDKHSLEDCI GFKKSLEKHM AFEKGKRVRV VEKNEEMPPH 600
  601 EPDSAYPDSD LHVSHIFGGS TTYSSKREYK KVEREVCSTW QGAAPKMKWS EQKIEFSEED 660
  661 HPKTSVIPGR YPIVVEPTIQ NIKVARVLID GGSSINLLCT STLDAMGLPQ SELTPTDQPF 720
  721 HGITPQSSSR PLGKITLPMT FGQANNFRTE QITFDVAEFD TAYNTIIGRT ALAKFMAASH 780
  781 YAYQVLKIPG PKGTIIIQGN AKLAVQCDKR SLDMVEQTPS PPATTEPPKK RFAPDRKQAI 840
  841 REELDELLKA GFIREVLHPE WLANPVMVRK ANGKWRICVD FTDLNKACPK DHFPLPRIDQ 900
  901 LVDSTAGCEL LSFLDAYSGY HQISIAKEDE EKIAFITPFG VFCYVKMPFG LITAGNTFQR 960
  961 TVQGALSNQL GNNVEAYVDD IVVKTKTSDS LRKRSTNSDD IASCSILRKA NPEKIKAIEN1020
 1021 MKSPTRLKEV QKLTGCMAAL SIFVARMGER GQPFFALLKK QDKFVWTQEA EETFIAFKRY1080
 1081 LSNPPVLVAP QPNEELFLYI AATPYSVSTV IIVEREKVQR PVYYVSEALH DAKTRYPQIQ1140
 1141 KLLYAIIMTS RKLRHYFQAH RVTVVSSFPL GEVVRNKDVV SRIAKWVVEL SQFDVHFVPR1200
 1201 TAIKSQVLAD FVASWTMPDN KSDNQGDNET WTMAFDGALN SQGAGAGFIL TSPSGDQFKH1260
 1261 AIHLNFRATN NTAEYEGLLA GIRAAAVLGA KRLIVKGDSE LVTNQVHKDY KCSNPELSKY1320
 1321 LAEVRKLEKR FDGIEVRHVY RKDNVEPDDL ARRASRQEPL EPDTFLDILT KPSVKEVSGE1380
 1381 VGPNTPDISS EVIEAERAVA DIETTDDWRI PLIKFISSEE LPEDDTEAEK ITRKAKIYCM1440
 1441 VGNDLYKKAP NGVLLKCVST DDGRQLLLDI HEGICGSHAA GRTLVI

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..93] Pfam 13.79588 No description for PF05754.6 was found. No confident structure predictions are available.
    2 View Details [94..261] deduced N/A No confident structure predictions are available.
    3 View Details [262..531] PSI-BLAST 25.69897 No description for 3dikA was found.
    4 View Details [532..624] deduced N/A No confident structure predictions are available.
    5 View Details [625..799] PSI-BLAST 24.154902 HIV-1 protease in complex with fluoro substituted diol-based C2- symmetric inhibitor
    6 View Details [800..1369] PSI-BLAST 154.0 HIV RNase H (Domain of reverse transcriptase); HIV-1 reverse transcriptase
    7 View Details [1370..1486] PSI-BLAST 25.0 N-terminal Zn binding domain of HIV integrase; Retroviral integrase, catalytic domain


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle