| Protein: | gi|110288766 |
| Organism: | Oryza sativa Japonica Group |
| Length: | 1486 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
No multiple sequence alignment data found for gi|110288766.
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Region A: Residues: [1-93] |
1 11 21 31 41 51
| | | | | |
1 MVTAGDQRRD GAAAERAERR GKRKRRSSAH PGSTATTGTA AEAEESGGAV RDGEDDGAPA 60
61 VGGRNEGADE VDDDAAKPME DYGSSTTSAP REV
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| Detection Method: |  |
| Confidence: | 13.79588 |
| Match: | PF05754.6 |
| Description: | No description for PF05754.6 was found. |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
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Region A: Residues: [94-261] |
1 11 21 31 41 51
| | | | | |
1 LAIDGVGTSA QANAEAANQS TTPAQHIRAV QAILRETPYD PVLNDDLKCW IERLRESMTN 60
61 LSNAFEEAAT AAHQDQPRIG DANGEDPEQR ELPRQATPPP RGTGDLRDQI NGRRKARRTR 120
121 DDANRSRRHV SSRRHDRGNR PNEDRDYNDR EQRGPDNTGH GRRRNDDD
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
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Region A: Residues: [262-531] |
1 11 21 31 41 51
| | | | | |
1 DGDRRRDNSE RQREDSRDPG HHPRNRTLEP SDPSSSSSSA SSSSSDRHPR RSRDRRQPTA 60
61 PNAGCRAFGR SLRDVRWPER FRPRAIKKYD GSTDPEEFLQ VYSTVLYAAG ADDNALANYL 120
121 PTALKGSARS WLMHLPPYSI SSWADLWQQF VANFQGTYKH HAIEDDLHAL TQNSGESLRE 180
181 YVRRFNECRN TIPEITDSSV IRTFKSGVRD RYTTQELPTR RITTTRRLFE IVERKNDKPK 240
241 TGGEKKPAAD ASESSKKKNH KNRKRKAQAE
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| Detection Method: | |
| Confidence: | 25.69897 |
| Match: | 3dikA |
| Description: | No description for 3dikA was found. |
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Region A: Residues: [532-624] |
1 11 21 31 41 51
| | | | | |
1 VLAAEYANPP KRPDPQGSDT KKSWCPIHKT DKHSLEDCIG FKKSLEKHMA FEKGKRVRVV 60
61 EKNEEMPPHE PDSAYPDSDL HVSHIFGGST TYS
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [625-799] |
1 11 21 31 41 51
| | | | | |
1 SKREYKKVER EVCSTWQGAA PKMKWSEQKI EFSEEDHPKT SVIPGRYPIV VEPTIQNIKV 60
61 ARVLIDGGSS INLLCTSTLD AMGLPQSELT PTDQPFHGIT PQSSSRPLGK ITLPMTFGQA 120
121 NNFRTEQITF DVAEFDTAYN TIIGRTALAK FMAASHYAYQ VLKIPGPKGT IIIQG
|
| Detection Method: | |
| Confidence: | 24.154902 |
| Match: | 1w5vA |
| Description: | HIV-1 protease in complex with fluoro substituted diol-based C2- symmetric inhibitor |
Matching Structure (courtesy of the PDB): |
|
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Region A: Residues: [800-1369] |
1 11 21 31 41 51
| | | | | |
1 NAKLAVQCDK RSLDMVEQTP SPPATTEPPK KRFAPDRKQA IREELDELLK AGFIREVLHP 60
61 EWLANPVMVR KANGKWRICV DFTDLNKACP KDHFPLPRID QLVDSTAGCE LLSFLDAYSG 120
121 YHQISIAKED EEKIAFITPF GVFCYVKMPF GLITAGNTFQ RTVQGALSNQ LGNNVEAYVD 180
181 DIVVKTKTSD SLRKRSTNSD DIASCSILRK ANPEKIKAIE NMKSPTRLKE VQKLTGCMAA 240
241 LSIFVARMGE RGQPFFALLK KQDKFVWTQE AEETFIAFKR YLSNPPVLVA PQPNEELFLY 300
301 IAATPYSVST VIIVEREKVQ RPVYYVSEAL HDAKTRYPQI QKLLYAIIMT SRKLRHYFQA 360
361 HRVTVVSSFP LGEVVRNKDV VSRIAKWVVE LSQFDVHFVP RTAIKSQVLA DFVASWTMPD 420
421 NKSDNQGDNE TWTMAFDGAL NSQGAGAGFI LTSPSGDQFK HAIHLNFRAT NNTAEYEGLL 480
481 AGIRAAAVLG AKRLIVKGDS ELVTNQVHKD YKCSNPELSK YLAEVRKLEK RFDGIEVRHV 540
541 YRKDNVEPDD LARRASRQEP LEPDTFLDIL
|
| Detection Method: | |
| Confidence: | 154.0 |
| Match: | 1lweA |
| Description: | HIV RNase H (Domain of reverse transcriptase); HIV-1 reverse transcriptase |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [1370-1486] |
1 11 21 31 41 51
| | | | | |
1 TKPSVKEVSG EVGPNTPDIS SEVIEAERAV ADIETTDDWR IPLIKFISSE ELPEDDTEAE 60
61 KITRKAKIYC MVGNDLYKKA PNGVLLKCVS TDDGRQLLLD IHEGICGSHA AGRTLVI
|
| Detection Method: | |
| Confidence: | 25.0 |
| Match: | 1k6yA |
| Description: | N-terminal Zn binding domain of HIV integrase; Retroviral integrase, catalytic domain |
Matching Structure (courtesy of the PDB): |
|
