YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30263802, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	292 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30263802, gi|....

Description	E-value	Query Range	Subject Range
DAPA_BARBK - 4-hydroxy-tetrahydrodipicolinate synthase OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) GN...	0.0	[3..291]	[1..290]
DAP1_BACHD, DAPA... - Dihydrodipicolinate synthase 1 OS=Bacillus halodurans GN=dapA1 PE=3 SV=1, (Q9KC32) Dihydrodipicolina... DAPA1_BACHD - 4-hydroxy-tetrahydrodipicolinate synthase 1 OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 ...	0.0	[2..287]	[1..286]
DAPA_GEOUR - 4-hydroxy-tetrahydrodipicolinate synthase OS=Geobacter uraniireducens (strain Rf4) GN=dapA PE=3 SV=1	0.0	[3..291]	[1..288]
gi\|241906440, gi... - gi\|241906440\|ref\|ZP_04791022.1\| dihydrodipicolinate synthase [Desulfovibrio vulgaris RCH1], gi\|24188... DAPA_DESVV - 4-hydroxy-tetrahydrodipicolinate synthase OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=... DAPA_DESVH - 4-hydroxy-tetrahydrodipicolinate synthase OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 295...	0.0	[2..291]	[1..290]
DAPA_GEOMG - 4-hydroxy-tetrahydrodipicolinate synthase OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / ...	2.0E-99	[3..290]	[1..287]
gi\|11268232 - pir\|\|D81141 dihydrodipicolinate synthase NMB0929 [imported] - Neisseria meningitidis (strain MC58 se... DAPA_NEIMB - 4-hydroxy-tetrahydrodipicolinate synthase OS=Neisseria meningitidis serogroup B (strain MC58) GN=dap... DAPA_NEIMB - Dihydrodipicolinate synthase OS=Neisseria meningitidis serogroup B GN=dapA PE=1 SV=1	4.0E-99	[3..292]	[1..290]
DAPA_CAUCR - Dihydrodipicolinate synthase OS=Caulobacter crescentus GN=dapA PE=3 SV=1 DAPA_CAUCR - 4-hydroxy-tetrahydrodipicolinate synthase OS=Caulobacter crescentus (strain ATCC 19089 / CB15) GN=da...	6.0E-99	[4..291]	[6..292]
DAPA_GEOSL - Dihydrodipicolinate synthase OS=Geobacter sulfurreducens GN=dapA PE=3 SV=1 DAPA_GEOSL - 4-hydroxy-tetrahydrodipicolinate synthase OS=Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127...	9.0E-99	[3..290]	[1..287]
gi\|229134605, gi... - gi\|229134605\|ref\|ZP_04263415.1\| Dihydrodipicolinate synthase [Bacillus cereus BDRD-ST196], gi\|228648... gi\|229061401, gi... - gi\|229061401\|ref\|ZP_04198746.1\| Dihydrodipicolinate synthase [Bacillus cereus AH603], gi\|228717824\|g... gi\|89206922, gi\|... - gi\|89206922\|ref\|ZP_01185472.1\| Dihydrodipicolinate synthase subfamily [Bacillus weihenstephanensis K... gi\|229168537, gi... - gi\|229168537\|ref\|ZP_04296260.1\| Dihydrodipicolinate synthase [Bacillus cereus AH621], gi\|228614943\|g... gi\|229012981, gi... - gi\|229012981\|ref\|ZP_04170146.1\| Dihydrodipicolinate synthase [Bacillus mycoides DSM 2048], gi\|228748...	2.0E-98	[1..292]	[1..292]
gi\|78100938, gi\|... - gi\|78100938\|pdb\|1XL9\|D Chain D, Crystal Structure Of Dihydrodipicolinate Synthase Dapa-2 (Ba3935) Fr...	2.0E-98	[1..292]	[10..301]

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Predicted Domain #1

Region A:
Residues: [1-292]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIDFGTIATA MVTPFDINGN IDFAKTTKLV NYLIDNGTTA IVVGGTTGES PTLTSEEKVA  60
   61 LYRHVVSVVD KRVPVIAGTG SNNTHASIDL TKKATEVGVD AVMLVAPYYN KPSQEGMYQH 120
  121 FKAIAESTPL PVMLYNVPGR SIVQISVDTV VRLSEIENIV AIKDAGGDVL TMTEIIEKTA 180
  181 DDFAVYSGDD GLTLPAMAVG AKGIVSVASH VIGNEMQEMI AAFQAGEFKK AQKLHQLLVR 240
  241 VTDSLFMAPS PTPVKTALQM VGLDVGSVRL PLLPLTEEER VTLQSVMQSI PR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	100.0
Match:	1xkyA
Description:	Crystal Structure of Dihydrodipicolinate Synthase DapA-2 (BA3935) from Bacillus Anthracis at 1.94A Resolution.
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	2.67031204377352	bayes_pls_golite062009
3-deoxy-7-phosphoheptulonate synthase activity	2.02591266233154	bayes_pls_golite062009
fructose-bisphosphate aldolase activity	1.7625405035454	bayes_pls_golite062009
transferase activity, transferring aldehyde or ketonic groups	1.72893315846141	bayes_pls_golite062009
transaldolase activity	1.38790063456575	bayes_pls_golite062009
lyase activity	0.740424046054758	bayes_pls_golite062009
transferase activity	0.464721888799972	bayes_pls_golite062009
aldehyde-lyase activity	0.351872954170322	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: