YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30258463, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	368 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30258463, gi|....

Description	E-value	Query Range	Subject Range
gi\|90335261, gi\|... - gi\|90420533\|ref\|ZP_01228440.1\| transcription termination/elongation factor nusA [Aurantimonas sp. SI... gi\|90335261, gi\|... - gi\|90420533\|ref\|ZP_01228440.1\| transcription termination/elongation factor nusA [Aurantimonas sp. SI...	0.0	[4..366]	[9..371]
gi\|56379637, gi\|... - gi\|56419795\|ref\|YP_147113.1\| transcription elongation factor NusA [Geobacillus kaustophilus HTA426],...	0.0	[1..367]	[1..367]
gi\|114705359, gi... - gi\|114705359\|ref\|ZP_01438267.1\| transcription elongation factor NusA [Fulvimarina pelagi HTCC2506], ...	0.0	[4..366]	[9..371]
gi\|166961564, gi... - gi\|167420758\|ref\|ZP_02312511.1\| transcription termination factor NusA [Yersinia pestis biovar Orient... gi\|167423617, gi... - gi\|167423617\|ref\|ZP_02315370.1\| transcription termination factor NusA [Yersinia pestis biovar Mediae... gi\|169752480, gi... - gi\|170025946\|ref\|YP_001722451.1\| transcription elongation factor NusA [Yersinia pseudotuberculosis Y... gi\|186893840, gi... - gi\|186893840\|ref\|YP_001870952.1\| transcription elongation factor NusA [Yersinia pseudotuberculosis P... gi\|77634857, gi\|... - gi\|77634857\|ref\|ZP_00796949.1\| COG0195: Transcription elongation factor [Yersinia pestis Angola], gi... gi\|117675032, gi... - gi\|77631476\|ref\|ZP_00794062.1\| COG0195: Transcription elongation factor [Yersinia pseudotuberculosis... gi\|25299783 - pir\|\|AB0425 N utilization substance protein A [imported] - Yersinia pestis (strain CO92) gi\|165925730, gi... - gi\|165925730\|ref\|ZP_02221562.1\| transcription termination factor NusA [Yersinia pestis biovar Orient... gi\|165991039, gi... - gi\|166010132\|ref\|ZP_02231030.1\| transcription termination factor NusA [Yersinia pestis biovar Antiqu... gi\|115349122, gi... - gi\|218930511\|ref\|YP_002348386.1\| transcription elongation factor NusA [Yersinia pestis CO92], gi\|161... gi\|166214620, gi... - gi\|166214620\|ref\|ZP_02240655.1\| transcription termination factor NusA [Yersinia pestis biovar Antiqu... gi\|51594831, gi\|... - gi\|51594831\|ref\|YP_069022.1\| transcription elongation factor NusA [Yersinia pseudotuberculosis IP 32... gi\|167049334, gi... - gi\|167401309\|ref\|ZP_02306809.1\| transcription termination factor NusA [Yersinia pestis biovar Antiqu... gi\|229899713, gi... - gi\|229899713\|ref\|ZP_04514854.1\| transcription termination/antitermination L factor [Yersinia pestis ... gi\|229679645, gi... - gi\|229903875\|ref\|ZP_04518988.1\| transcription termination/antitermination L factor [Yersinia pestis ... gi\|229896638, gi... - gi\|229896638\|ref\|ZP_04511805.1\| transcription termination/antitermination L factor [Yersinia pestis ... Q66F61\|Q66F61_YERPS - N utilization substance protein A - Yersinia pseudotuberculosis gi\|229695515, gi... - gi\|229839149\|ref\|ZP_04459308.1\| transcription termination/antitermination L factor [Yersinia pestis ... gi\|145600793, gi... - gi\|145600793\|ref\|YP_001164869.1\| transcription elongation factor NusA [Yersinia pestis Pestoides F],... gi\|149288911, gi... - gi\|153997274\|ref\|ZP_02022374.1\| N utilization substance protein A [Yersinia pestis CA88-4125], gi\|14... gi\|89101687, gi\|... - gi\|89101687\|ref\|ZP_01174396.1\| COG0195: Transcription elongation factor [Yersinia pestis biovar Orie... gi\|108806045, gi... - gi\|108806045\|ref\|YP_649961.1\| transcription elongation factor NusA [Yersinia pestis Antiqua], gi\|108...	0.0	[1..367]	[1..368]
gi\|21957405, gi\|... - gi\|22124601\|ref\|NP_668024.1\| transcription elongation factor NusA [Yersinia pestis KIM], gi\|21957405... gi\|45435297, gi\|... - gi\|45440440\|ref\|NP_991979.1\| transcription elongation factor NusA [Yersinia pestis biovar Microtus s...	0.0	[1..367]	[7..374]
gi\|86355778, gi\|... - gi\|86355778\|ref\|YP_467670.1\| transcription elongation factor NusA [Rhizobium etli CFN 42], gi\|862798...	0.0	[4..366]	[9..371]
gi\|238724380, gi... - gi\|77974018\|ref\|ZP_00829561.1\| COG0195: Transcription elongation factor [Yersinia frederiksenii ATCC...	0.0	[1..367]	[1..368]
gi\|13474627, gi\|... - gi\|14025381\|dbj\|BAB51982.1\| N utilization substance protein A [Mesorhizobium loti MAFF303099], gi\|13...	0.0	[4..366]	[9..371]
gi\|238727621, gi... - gi\|77978624\|ref\|ZP_00834051.1\| COG0195: Transcription elongation factor [Yersinia intermedia ATCC 29...	0.0	[1..367]	[1..368]
gi\|238783516, gi... - gi\|77958790\|ref\|ZP_00822818.1\| COG0195: Transcription elongation factor [Yersinia bercovieri ATCC 43... gi\|77961868, gi\|... - gi\|77961868\|ref\|ZP_00825697.1\| COG0195: Transcription elongation factor [Yersinia mollaretii ATCC 43...	0.0	[1..367]	[1..368]

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Predicted Domain #1

Region A:
Residues: [1-368]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTELLDALL VLESEKGISK DIIIDAIEAA LISAYKRNFN QAQNVRVSFN PQVGTIQVLA  60
   61 RKDVVDNVFD PRLEISVEEA RQINPNYQDG DVLEIEVTPK DFGRIAAQTA KQVVTQRVRE 120
  121 AERGVIYSEF SDREEDIMVG IVQRQDARFI YVSLGKVEAL LPVSEQMPNE QYKPHDRIRV 180
  181 FITKVEKTTK GPQIYVSRTH PGLLKRLFEM EVPEIYDGTV EIRSVAREAG DRSKISVHAE 240
  241 NIDVDPVGSC VGPKGQRVQR IVDELKGEKI DIVRWSNDPV EYVANALSPS QVVKVLVDEE 300
  301 EKATTVVVPD HQLSLAIGKR GQNARLAAKL TGWKIDIKSE SDAKQLGIVT EEDSVVAFGF 360
  361 DSVEDEIE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	92.39794
Match:	1l2fA
Description:	Crystal structure of NusA from Thermotoga maritima: a structure-based role of the N-terminal domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
transcription termination factor activity	6.18058830887387	bayes_pls_golite062009
transcription regulator activity	2.56369131794526	bayes_pls_golite062009
binding	1.18862393890403	bayes_pls_golite062009
catalytic activity	0.471337605075652	bayes_pls_golite062009
nucleic acid binding	0.463825470364686	bayes_pls_golite062009
structural constituent of ribosome	0.21243001318793	bayes_pls_golite062009
DNA binding	0.11293132181233	bayes_pls_golite062009
protein binding	0.0127233627751602	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: