YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30258796, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	146 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30258796, gi|....

Description	E-value	Query Range	Subject Range
gi\|118503839, gi... - gi\|71839298\|ref\|ZP_00679049.1\| PAS [Pelobacter propionicus DSM 2379], gi\|71740231\|gb\|EAO35398.1\| PAS...	4.0E-31	[1..138]	[536..676]
gi\|148263292, gi... - gi\|88935603\|ref\|ZP_01141233.1\| PAS [Geobacter uraniumreducens Rf4], gi\|88917698\|gb\|EAR36887.1\| PAS [...	8.0E-31	[1..139]	[493..637]
gi\|115369869, gi... - gi\|115373113\|ref\|ZP_01460415.1\| hybrid sensor [Stigmatella aurantiaca DW4/3-1], gi\|115369869\|gb\|EAU6...	1.0E-30	[1..141]	[876..1023]
gi\|73661008, gi\|... - gi\|73749292\|ref\|YP_308531.1\| sensor histidine kinase/response regulator [Dehalococcoides sp. CBDB1],...	2.0E-30	[3..141]	[806..951]
gi\|26989664, gi\|... - gi\|26989664\|ref\|NP_745089.1\| sensor histidine kinase/response regulator [Pseudomonas putida KT2440],...	3.0E-30	[1..144]	[359..505]
gi\|82716688, gi\|... - gi\|82736354\|ref\|ZP_00899213.1\| ATP-binding region, ATPase-like [Pseudomonas putida F1], gi\|82716688\|...	3.0E-30	[1..144]	[321..467]
gi\|148654385, gi... - gi\|148654385\|ref\|YP_001274590.1\| integral membrane sensor hybrid histidine kinase [Roseiflexus sp. R...	3.0E-30	[3..141]	[275..420]
gi\|77995250, gi\|... - gi\|78043135\|ref\|YP_360865.1\| sensory box histidine kinase [Carboxydothermus hydrogenoformans Z-2901]...	3.0E-30	[1..141]	[296..444]
gi\|222524154, gi... - gi\|222524154\|ref\|YP_002568625.1\| multi-sensor signal transduction histidine kinase [Chloroflexus sp.... gi\|76261013, gi\|... - gi\|76261013\|ref\|ZP_00768636.1\| PAS [Chloroflexus aurantiacus J-10-fl], gi\|76164063\|gb\|EAO58220.1\| PA...	4.0E-30	[1..143]	[442..589]
gi\|83643564, gi\|... - gi\|83643564\|ref\|YP_431999.1\| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396], gi...	5.0E-30	[1..145]	[282..428]

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Predicted Domain #1

Region A:
Residues: [1-146]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRNEMNLQFS ALSQNESFAR VTVAAFIAQL DPTMEELTEI KTVVSEAVTN AIIHGYEGNA  60
   61 EGVVYISVIL EEAMVKLTIR DEGIGIFNLD EARQPLFTTK PELERSGMGF TIMENFMDEV 120
  121 EVISNESFGT TIHLTKYLSN SNALCN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	24.69897
Match:	1tilA
Description:	Crystal Structures of the ADP and ATP bound forms of the Bacillus Anti-sigma factor SpoIIAB in complex with the Anti-anti-sigma SpoIIAA:Poised for phosphorylation complex with ATP, crystal form II
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	2.4793446884777	bayes_pls_golite062009
signal transducer activity	2.06838336910818	bayes_pls_golite062009
molecular transducer activity	2.06838336910818	bayes_pls_golite062009
protein histidine kinase activity	1.8906654876652	bayes_pls_golite062009
phosphotransferase activity, nitrogenous group as acceptor	1.85910793808345	bayes_pls_golite062009
two-component sensor activity	1.85862055392094	bayes_pls_golite062009
protein kinase activity	1.75594994699944	bayes_pls_golite062009
kinase activity	1.62312315629423	bayes_pls_golite062009
transcription regulator activity	1.62206149398362	bayes_pls_golite062009
phosphotransferase activity, alcohol group as acceptor	1.58219702413095	bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups	1.36033057569078	bayes_pls_golite062009
transferase activity	1.29436538270168	bayes_pls_golite062009
DNA binding	1.07338044513491	bayes_pls_golite062009
nucleic acid binding	1.03442329723544	bayes_pls_golite062009
binding	0.162154598845105	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: