YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30264153, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	396 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30264153, gi|....

Description	E-value	Query Range	Subject Range
gi\|116052037, gi... - gi\|116052037\|ref\|YP_789120.1\| D-ala-D-ala-carboxypeptidase [Pseudomonas aeruginosa UCBPP-PA14], gi\|1... gi\|126196061, gi... - gi\|254242683\|ref\|ZP_04936005.1\| D-ala-D-ala-carboxypeptidase [Pseudomonas aeruginosa 2192], gi\|19455... gi\|194547876, gi... - gi\|254236891\|ref\|ZP_04930214.1\| D-ala-D-ala-carboxypeptidase [Pseudomonas aeruginosa C3719], gi\|1945... gi\|11348401, gi\|... - gi\|4887207\|gb\|AAD32234.1\|AF147448_5 penicillin-binding protein 5 [Pseudomonas aeruginosa], pir\|\|C831... gi\|9950191, gi\|1... - gi\|9950191\|gb\|AAG07386.1\|AE004817_10 D-ala-D-ala-carboxypeptidase [Pseudomonas aeruginosa PAO1], gi\|... gi\|218769943, gi... - gi\|218889720\|ref\|YP_002438584.1\| D-ala-D-ala-carboxypeptidase [Pseudomonas aeruginosa LESB58], gi\|21...	0.0	[4..393]	[5..381]
gi\|84319218 - gi\|84319218\|ref\|ZP_00967619.1\| COG1686: D-alanyl-D-alanine carboxypeptidase [Pseudomonas aeruginosa ... gi\|46164608 - gi\|46164608\|ref\|ZP_00137438.2\| COG1686: D-alanyl-D-alanine carboxypeptidase [Pseudomonas aeruginosa ... gi\|84325131 - gi\|84325131\|ref\|ZP_00973171.1\| COG1686: D-alanyl-D-alanine carboxypeptidase [Pseudomonas aeruginosa ... gi\|107103514 - gi\|107103514\|ref\|ZP_01367432.1\| hypothetical protein PaerPA_01004584 [Pseudomonas aeruginosa PACS2]	5.0E-99	[37..393]	[3..354]
gi\|148549880, gi... - gi\|82738224\|ref\|ZP_00901061.1\| D-alanyl-D-alanine carboxypeptidase [Pseudomonas putida F1], gi\|82714...	5.0E-99	[5..393]	[23..398]
gi\|94417068 - gi\|94417068\|ref\|ZP_01296890.1\| hypothetical protein PaerP_01001264 [Pseudomonas aeruginosa PA7]	6.0E-99	[37..393]	[3..354]
gi\|24986562, gi\|... - gi\|26991483\|ref\|NP_746908.1\| Serine-type D-Ala-D-Ala carboxypeptidase [Pseudomonas putida KT2440], g...	1.0E-98	[5..393]	[6..381]
gi\|89206738, gi\|... - gi\|89206738\|ref\|ZP_01185292.1\| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus weihenstephanensis...	2.0E-98	[1..396]	[1..396]
gi\|68347052, gi\|... - gi\|70732753\|ref\|YP_262516.1\| D-alanyl-D-alanine carboxypeptidase [Pseudomonas fluorescens Pf-5], gi\|...	4.0E-98	[4..393]	[5..380]
gi\|104783763, gi... - gi\|95112750\|emb\|CAK17478.1\| D-ala-D-ala-carboxypeptidase; penicillin-binding protein 5 (precursor) [... gi\|95112750 - gi\|95112750\|emb\|CAK17478.1\| D-ala-D-ala-carboxypeptidase; penicillin-binding protein 5 (precursor) [...	2.0E-97	[5..393]	[6..381]
gi\|228792478, gi... - gi\|228967109\|ref\|ZP_04128145.1\| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S... gi\|74490103, gi\|... - gi\|75762410\|ref\|ZP_00742280.1\| D-alanyl-D-alanine serine-type carboxypeptidase [Bacillus thuringiens... gi\|218543204, gi... - gi\|218899237\|ref\|YP_002447648.1\| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus cereus G984...	2.0E-97	[1..396]	[1..396]
gi\|228608742, gi... - gi\|229174752\|ref\|ZP_04302276.1\| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family S... gi\|42739119, gi\|... - gi\|42783191\|ref\|NP_980438.1\| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 10987], gi\|42...	2.0E-97	[1..396]	[1..396]

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Predicted Domain #1

Region A:
Residues: [1-396]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRVFGILVC FMLLLSGTSV SFAQSEKTKQ DKTEETTPKL AEQASSAIVI EQDTGKVLFD  60
   61 KNPNEKLPPA SMTKIMTMLL IMEQVEKGKL KLTDKVRASE HAASMGGSQI FLEPGEEMTV 120
  121 NEMLKGIAIA SGNDASVAVA EHIAGSEEGF VNMMNKKAKD LGLKNTHFQN PTGLPAKDHY 180
  181 STANDMAIMA KELMKYPLIR KYTGKYEDYL REDTDKKFWL VNTNKLVRFY PGVDGVKTGF 240
  241 TTEAKYCLTA SAEKNGMRVI SVVMGAPTSK ERNNQVTKLL DYAFGQYMTK KLYTRGEKIK 300
  301 TVQVGKGKKE KVDLVASDNV SLLMKKGENM DKVKQEVIAE KKVKAPIKKG DALGTLVIKK 360
  361 DKDVLLKQTI VAKEDVAAAS WWELFKRSFG MFSTSK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	84.30103
Match:	1nzoA
Description:	The crystal structure of wild type penicillin-binding protein 5 from E. coli
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
drug binding	3.43867028493374	bayes_pls_golite062009
serine-type D-Ala-D-Ala carboxypeptidase activity	3.12650314537616	bayes_pls_golite062009
penicillin binding	2.89507018520983	bayes_pls_golite062009
serine-type carboxypeptidase activity	2.70174066798582	bayes_pls_golite062009
serine-type exopeptidase activity	2.69091897402517	bayes_pls_golite062009
carboxypeptidase activity	1.96547160092829	bayes_pls_golite062009
catalytic activity	1.85492008367309	bayes_pls_golite062009
exopeptidase activity	1.44522375970439	bayes_pls_golite062009
binding	1.11566650386305	bayes_pls_golite062009
peptidase activity	0.376767771035659	bayes_pls_golite062009
peptidase activity, acting on L-amino acid peptides	0.163657050466595	bayes_pls_golite062009
protein binding	0.0666688846338231	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: