YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|25302280
Organism:	Agrobacterium tumefaciens
Length:	225 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|25302280.

Description	E-value	Query Range	Subject Range
gi\|115257670, gi... - gi\|116253022\|ref\|YP_768860.1\| putative pyrazinamidase/nicotinamidase [Rhizobium leguminosarum bv. vi...	205.0	[0..17]	[223..1]
gi\|86358424, gi\|... - gi\|86358424\|ref\|YP_470316.1\| pyrazinamidase/nicotinamidase protein [Rhizobium etli CFN 42], gi\|86282...	200.0	[0..18]	[223..1]
gi\|159185035, gi... - gi\|17935951\|ref\|NP_532741.1\| pyrazinamidase/nicotinamidase [Agrobacterium tumefaciens str. C58], gi\|... gi\|25302281 - pir\|\|AC2830 pyrazinamidase/nicotinamidase [imported] - Agrobacterium tumefaciens (strain C58, Dupont...	200.0	[0..18]	[225..1]
gi\|83815921, gi\|... - gi\|83815921\|ref\|YP_445581.1\| pyrazinamidase/nicotinamidase [Salinibacter ruber DSM 13855], gi\|837573...	197.0	[0..20]	[223..3]
gi\|77459112, gi\|... - gi\|77459112\|ref\|YP_348618.1\| nicotinamidase [Pseudomonas fluorescens Pf0-1], gi\|77383115\|gb\|ABA74628...	195.0	[0..17]	[223..5]
gi\|27375788, gi\|... - gi\|27375788\|ref\|NP_767317.1\| bifunctional pyrazinamidase/nicotinamidase [Bradyrhizobium japonicum US... gi\|6433784 - gi\|6433784\|emb\|CAB60666.1\| hypothetical protein [Bradyrhizobium japonicum]	194.0	[0..19]	[222..36]
gi\|15073509, gi\|... - gi\|8571421\|gb\|AAF76877.1\|AF247710_2 putative pyrazinamidase/nicotinamidase PncA [Sinorhizobium melil... gi\|15964332 - gi\|15964332\|ref\|NP_384685.1\| pyrazinamidase/nicotinamidase (Includes: pyrazinamidase, nicotinamidase...	192.0	[0..20]	[217..17]
gi\|71737819, gi\|... - gi\|71737819\|ref\|YP_275215.1\| pyrazinamidase/nicotinamidase [Pseudomonas syringae pv. phaseolicola 14...	192.0	[0..9]	[223..3]
gi\|110286520, gi... - gi\|69274774\|ref\|ZP_00610686.1\| Nicotinamidase [Mesorhizobium sp. BNC1], gi\|68193214\|gb\|EAN07866.1\| N...	192.0	[0..15]	[217..4]
gi\|78517423, gi\|... - gi\|78694307\|ref\|ZP_00858820.1\| Twin-arginine translocation pathway signal [Bradyrhizobium sp. BTAi1]...	192.0	[0..1]	[222..16]

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Predicted Domain #1

Region A:
Residues: [1-225]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIRQSRLGIL RKKGRHIMKA LLLIDIQNGF CPGGNLAVTD GDAVVPIANA LIDNGGYDLI  60
   61 VASQDWHPEN HGSFASQHPG KQPFDMGELS GKPQMMWPDH CVQGTPDAEF HPDLNMEAFD 120
  121 YIQQKGENPA IDSYSAFRDN DQVATTGLSD YLARQGVTQL DVCGLATDYC VSFSVQDALD 180
  181 MLPGVKVRFI EDASRGIDPQ GIKAAVAAMR EKGAVILKSR DILRN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	44.39794
Match:	1ilwA
Description:	Pyrazinamidase/nicotinamidase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
nicotinamidase activity	2.590271821288	bayes_pls_golite062009
binding	1.80707112356899	bayes_pls_golite062009
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	1.33901087189475	bayes_pls_golite062009
catalytic activity	0.992051062697807	bayes_pls_golite062009
protein binding	0.343971697425971	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: