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View Structure Prediction Details

Protein: gi|49530143, gi|...
Organism: Acinetobacter sp. ADP1
Length: 250 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|49530143, gi|....

Description E-value Query
Range
Subject
Range
gi|82721656, gi|... - gi|82740988|ref|ZP_00903719.1| MutT/nudix family protein [Shewanella sp. W3-18-1], gi|82721656|gb|EA...
203.0 [0..8] [243..1]

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Predicted Domain #1
Region A:
Residues: [1-250]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLRVNFSSE QAFLAQYQKS DYPSPLMTVD MAIFSVDQGQ LQILLIQRSN YPQKSYWALP  60
   61 GGFVDLEQDQ NLMACAHRKL LEKTGIDSPY LEQVASIGNA KRDPRGWSVT VLYFALINFK 120
  121 AYQQQIQHSE HSEWVTLEQA LKLDLAFDHH DLLQQAFARL NNKTRYTALP ISLMPPLFTL 180
  181 TELQNIYEII LGHNLEKKAF RRRMIESGVV EETDQSKIAG KRPAQLYRFA LQDYDFNFPR 240
  241 MLEYPRHHED 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 41.69897
Match: 2fb1A
Description: Crystal structure of Hypothetical protein BT0354
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
transcription regulator activity 2.22556601647457 bayes_pls_golite062009
DNA binding 2.21146670711589 bayes_pls_golite062009
catalytic activity 1.49075808737475 bayes_pls_golite062009
transcription factor activity 1.41176606828436 bayes_pls_golite062009
sequence-specific DNA binding 0.19465912398512 bayes_pls_golite062009
hydrolase activity 0.0414797913908738 bayes_pls_golite062009
transcription activator activity 0.0178778906463769 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle