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View Structure Prediction Details

Protein: gi|54308469, gi|...
Organism: Photobacterium profundum SS9
Length: 210 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|54308469, gi|....

Description E-value Query
Range
Subject
Range
gi|108563462, gi... - gi|108563462|ref|YP_627778.1| 2-keto-3-deoxy-6-phosphogluconate aldolase [Helicobacter pylori HPAG1]...
188.0 [0..1] [207..1]

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Predicted Domain #1
Region A:
Residues: [1-210]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQQLIEKLK AFKVIPVIQI NNIEQAVPLA KTLVENGLPV AEVTFRTEAA AEAIRLMREA  60
   61 YPEMCIGAGT VLNAEQVDRA VEAGAEFVVA PGLNPNTVRY CQEINIPMVP GVNNPSQVEQ 120
  121 ALELGLTFLK FFPAEASGGI NMVKSLLAPY VDVSFMPTGG IGEANIRDYL AVDRILCCGG 180
  181 TWMVSPKMIE AGQWDEIGKL VREAVALVQD 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 45.0
Match: 1vhcA
Description: Crystal structure of a putative KHG/KDPG aldolase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
2-dehydro-3-deoxy-phosphogluconate aldolase activity 3.5031381823147 bayes_pls_golite062009
catalytic activity 2.67031204377352 bayes_pls_golite062009
fructose-bisphosphate aldolase activity 0.840107349031025 bayes_pls_golite062009
lyase activity 0.740424046054758 bayes_pls_golite062009
transferase activity, transferring aldehyde or ketonic groups 0.643395146148785 bayes_pls_golite062009
transferase activity 0.464721888799972 bayes_pls_golite062009
aldehyde-lyase activity 0.351872954170322 bayes_pls_golite062009
transaldolase activity 0.337067552042715 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle