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View Structure Prediction Details

Protein: HSK3_ASHGO
Organism: Eremothecium gossypii
Length: 68 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HSK3_ASHGO.

Description E-value Query
Range
Subject
Range
HSK3 - Essential subunit of the Dam1 complex (aka DASH complex), couples kinetochores to the force produced...
gi|190409700 - gi|190409700|gb|EDV12965.1| DASH complex subunit HSK3 [Saccharomyces cerevisiae RM11-1a]
HSK3_YEAST - DASH complex subunit HSK3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=HSK3 PE=1 SV=1
gi|151941669 - gi|151941669|gb|EDN60031.1| helper of ask1 [Saccharomyces cerevisiae YJM789]
100.0 [0..1] [67..1]

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Predicted Domain #1
Region A:
Residues: [1-68]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDQTKRRHYS QLSQQLQLLQ KNLEATTQHV ETMSVQCNEH LVNKLGKIQA SWFIGGNRCF  60
   61 EQELLGKR

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.837 a.7.17 Description not found.
View Download 0.737 a.24.9 alpha-catenin/vinculin
View Download 0.715 a.59.1 PAH2 domain
View Download 0.695 a.140.4 Recombination endonuclease VII, C-terminal and dimerization domains
View Download 0.653 d.2.1 Lysozyme-like
View Download 0.640 a.2.8 Eukaryotic DNA topoisomerase I, dispensable insert domain
View Download 0.640 a.2.8 Eukaryotic DNA topoisomerase I, dispensable insert domain
View Download 0.574 a.59.1 PAH2 domain
View Download 0.541 a.65.1 Annexin
View Download 0.415 a.4.5 "Winged helix" DNA-binding domain
View Download 0.321 a.4.5 "Winged helix" DNA-binding domain
View Download 0.268 a.4.1 Homeodomain-like
View Download 0.261 a.4.1 Homeodomain-like


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle