YRC Public Data Repository - Protein Structure Prediction

Protein:	HSK3_ASHGO
Organism:	Eremothecium gossypii
Length:	68 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HSK3_ASHGO.

Description	E-value	Query Range	Subject Range
HSK3 - Essential subunit of the Dam1 complex (aka DASH complex), couples kinetochores to the force produced... gi\|190409700 - gi\|190409700\|gb\|EDV12965.1\| DASH complex subunit HSK3 [Saccharomyces cerevisiae RM11-1a] HSK3_YEAST - DASH complex subunit HSK3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=HSK3 PE=1 SV=1 gi\|151941669 - gi\|151941669\|gb\|EDN60031.1\| helper of ask1 [Saccharomyces cerevisiae YJM789]	100.0	[0..1]	[67..1]

Back

Predicted Domain #1

Region A:
Residues: [1-68]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDQTKRRHYS QLSQQLQLLQ KNLEATTQHV ETMSVQCNEH LVNKLGKIQA SWFIGGNRCF  60
   61 EQELLGKR

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.837	a.7.17	Description not found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits