YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|12721601, gi\|...
Organism:	Pasteurella multocida subsp. multocida str. Pm70
Length:	243 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|12721601, gi|....

Description	E-value	Query Range	Subject Range
gi\|68195862, gi\|... - gi\|69245332\|ref\|ZP_00603376.1\| Class II aldolase/adducin, N-terminal [Enterococcus faecium DO], gi\|6... gi\|48825725 - ref\|ZP_00286965.1\| COG0235: Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases [E...	273.0	[0..13]	[243..1]
gi\|1074955 - gi\|1074955\|pir\|\|H64108 L-ribulose-phosphate 4-epimerase (EC 5.1.3.4) - Haemophilus influenzae (strai...	272.0	[0..1]	[243..1]
gi\|82542665, gi\|... - gi\|82542665\|ref\|YP_406612.1\| L-ribulose-5-phosphate 4-epimerase [Shigella boydii Sb227], gi\|81244076... gi\|187730282, gi... - gi\|75175619\|ref\|ZP_00695827.1\| COG0235: Ribulose-5-phosphate 4-epimerase and related epimerases and ...	272.0	[0..13]	[243..1]
gi\|24111505, gi\|... - gi\|24111505\|ref\|NP_706015.1\| L-ribulose-5-phosphate 4-epimerase [Shigella flexneri 2a str. 301], gi\|... gi\|110613673, gi... - gi\|110804125\|ref\|YP_687645.1\| L-ribulose-5-phosphate 4-epimerase [Shigella flexneri 5 str. 8401], gi... gi\|30039868, gi\|... - gi\|30061626\|ref\|NP_835797.1\| L-ribulose-5-phosphate 4-epimerase [Shigella flexneri 2a str. 2457T], g...	272.0	[0..13]	[243..1]
gi\|209917252, gi... - gi\|209917252\|ref\|YP_002291336.1\| L-ribulose-5-phosphate 4-epimerase [Escherichia coli SE11], gi\|2099... gi\|218552644, gi... - gi\|218552644\|ref\|YP_002385557.1\| L-ribulose-5-phosphate 4-epimerase [Escherichia coli IAI1], gi\|2183... gi\|75189163, gi\|... - gi\|75189163\|ref\|ZP_00702430.1\| COG0235: Ribulose-5-phosphate 4-epimerase and related epimerases and ...	272.0	[0..13]	[243..1]
gi\|218350263, gi... - gi\|218693531\|ref\|YP_002401198.1\| L-ribulose-5-phosphate 4-epimerase [Escherichia coli 55989], gi\|218... ARAD_ECOLI - L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4) (Phosphoribulose isomerase) - Escherichia coli gi\|89106945, gi\|... - gi\|89106945\|ref\|AP_000725.1\| L-ribulose-5-phosphate 4-epimerase [Escherichia coli str. K-12 substr. ... gi\|124530630, gi... - gi\|124530630\|ref\|ZP_01701214.1\| L-ribulose-5-phosphate 4-epimerase [Escherichia coli B], gi\|12449905... gi\|254037477, gi... - gi\|254037477\|ref\|ZP_04871554.1\| L-ribulose-5-phosphate 4-epimerase [Escherichia sp. 1_1_43], gi\|2268... EG10055 - L-ribulose-5-phosphate 4-epimerase / L-ribulose-5-phosphate 4-epimerase gi\|75234300, gi\|... - gi\|75234300\|ref\|ZP_00718678.1\| COG0235: Ribulose-5-phosphate 4-epimerase and related epimerases and ... EG10055 - L-ribulose-5-phosphate 4-epimerase / L-ribulose-5-phosphate 4-epimerase gi\|157065210, gi... - gi\|75194280\|ref\|ZP_00704350.1\| COG0235: Ribulose-5-phosphate 4-epimerase and related epimerases and ... gi\|169756511, gi... - gi\|170021583\|ref\|YP_001726537.1\| L-ribulose-5-phosphate 4-epimerase [Escherichia coli ATCC 8739], gi... gi\|191167766, gi... - gi\|75229088\|ref\|ZP_00715668.1\| COG0235: Ribulose-5-phosphate 4-epimerase and related epimerases and ...	271.0	[0..13]	[243..1]
gi\|112822959, gi... - gi\|23466770\|ref\|ZP_00122357.1\| COG0235: Ribulose-5-phosphate 4-epimerase and related epimerases and ... gi\|46156065, gi\|... - gi\|46156065\|ref\|ZP_00204656.1\| COG0235: Ribulose-5-phosphate 4-epimerase and related epimerases and ...	271.0	[0..13]	[243..1]
gi\|74310678, gi\|... - gi\|74310678\|ref\|YP_309097.1\| L-ribulose-5-phosphate 4-epimerase [Shigella sonnei Ss046], gi\|73854155...	271.0	[0..13]	[243..1]
gi\|75511715, gi\|... - gi\|75511715\|ref\|ZP_00734353.1\| COG0235: Ribulose-5-phosphate 4-epimerase and related epimerases and ...	271.0	[0..13]	[243..1]
gi\|19747447, gi\|... - gi\|19747447\|gb\|AAL96979.1\| putative L-ribulose 5-phosphate [Streptococcus pyogenes MGAS8232], gi\|197...	270.0	[0..7]	[243..16]

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Predicted Domain #1

Region A:
Residues: [1-243]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDRTKNERRW FPMLEELKQK VFEANLALPK YKLVTFTWGN VSGIDREKNL VVIKPSGVEY  60
   61 DTMTVEDMVV VDLFTGQVVE GNKKPSSDTA THLELYRQFP SLGGIVHTHS RHATIWAQAG 120
  121 EDLIAAGTTH ADYFYGSIPC TRKMTPAEIQ GEYELETGKV IVETFRVRGI DPKDVPAVLV 180
  181 HSHGPFAWGT DPDNAVHNAV VLEEIGYMNL FSRQLRPNLA SMQQELLDKH YLRKHGKNAY 240
  241 YGQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	72.0
Match:	1jdiA
Description:	L-ribulose-5-phosphate 4-epimerase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
L-ribulose-phosphate 4-epimerase activity	3.50507333471987	bayes_pls_golite062009
catalytic activity	1.9511172460719	bayes_pls_golite062009
aldehyde-lyase activity	1.08084403816388	bayes_pls_golite062009
lyase activity	0.77829514510632	bayes_pls_golite062009
racemase and epimerase activity, acting on carbohydrates and derivatives	0.42493443904865	bayes_pls_golite062009
carbon-carbon lyase activity	0.2178091782272	bayes_pls_golite062009
racemase and epimerase activity	0.15063402811264	bayes_pls_golite062009
isomerase activity	0.0458367676418101	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: