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View Structure Prediction Details

Protein: RNPA_PSEAE
Organism: Pseudomonas aeruginosa PAO1
Length: 135 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RNPA_PSEAE.

Description E-value Query
Range		 Subject
Range
gi|49077256 - gi|49077256|gb|AAT49655.1| PA5569 [synthetic construct]
 1.0E-35 [1..135] [1..135]
RNPA_PSEA7 - Ribonuclease P protein component OS=Pseudomonas aeruginosa (strain PA7) GN=rnpA PE=3 SV=1
 4.0E-35 [1..135] [1..135]
RNPA_PSEPF - Ribonuclease P protein component OS=Pseudomonas fluorescens (strain Pf0-1) GN=rnpA PE=3 SV=1
 3.0E-34 [2..135] [1..133]
RNPA_PSE14 - Ribonuclease P protein component OS=Pseudomonas savastanoi pv. phaseolicola (strain 1448A / Race 6) ...
 1.0E-32 [2..135] [1..133]
RNPA_PSESM - Ribonuclease P protein component OS=Pseudomonas syringae pv. tomato GN=rnpA PE=3 SV=1
RNPA_PSESM - Ribonuclease P protein component OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=rnpA PE=3 SV=...
gi|213968443, gi... - gi|213968443|ref|ZP_03396586.1| ribonuclease P protein component [Pseudomonas syringae pv. tomato T1...
 1.0E-32 [2..135] [1..133]
gi|82716330, gi|... - gi|82736599|ref|ZP_00899456.1| ribonuclease P protein [Pseudomonas putida F1], gi|82716330|gb|EAP513...
 1.0E-32 [2..135] [33..165]
RNPA_SODGM - Ribonuclease P protein component OS=Sodalis glossinidius (strain morsitans) GN=rnpA PE=3 SV=1
 2.0E-32 [1..119] [1..118]
tr|I7BRH9|I7BRH9... - Ribonuclease P protein component OS=Pseudomonas putida (strain DOT-T1E) GN=rnpA PE=3 SV=1
gi|24981343, gi|... - gi|26986753|ref|NP_742178.1| ribonuclease P [Pseudomonas putida KT2440], gi|24981343|gb|AAN65642.1|A...
tr|E4R9L4|E4R9L4... - Ribonuclease P protein component OS=Pseudomonas putida (strain BIRD-1) GN=rnpA PE=3 SV=1
RNPA_PSEP1 - Ribonuclease P protein component OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=rnpA PE=3 SV=1
 2.0E-32 [1..135] [1..134]
RNPA_PECAS - Ribonuclease P protein component OS=Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672) GN...
RNPA_ERWCT - Ribonuclease P protein component OS=Erwinia carotovora subsp. atroseptica GN=rnpA PE=3 SV=1
 2.0E-30 [1..118] [1..117]

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Predicted Domain #1
Region A:
Residues: [1-135] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVSRDFDRDK RLLTARQFSA VFDSPTGKVP GKHVLLLARE NGLDHPRLGL VIGKKNVKLA  60
   61 VQRNRLKRLI RESFRHNQET LAGWDIVVIA RKGLGELENP ELHQQFGKLW KRLLRNRPRT 120
  121 ESPADAPGVA DGTHA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 25.154902
Match: 1a6fA
Description: RNASE P PROTEIN FROM BACILLUS SUBTILIS
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
tRNA-specific ribonuclease activity 6.1454778021122 bayes_pls_golite062009
ribonuclease P activity 5.34408239201797 bayes_pls_golite062009
structural constituent of ribosome 3.49304472389303 bayes_pls_golite062009
RNA binding 2.94550290381601 bayes_pls_golite062009
structural molecule activity 2.91017901273919 bayes_pls_golite062009
3'-5'-exoribonuclease activity 2.16830676862423 bayes_pls_golite062009
exoribonuclease activity, producing 5'-phosphomonoesters 1.94887328847363 bayes_pls_golite062009
exoribonuclease activity 1.90081280972069 bayes_pls_golite062009
mRNA binding 1.42024615739664 bayes_pls_golite062009
ribonuclease activity 1.31550811238109 bayes_pls_golite062009
transcription regulator activity 1.20748032530392 bayes_pls_golite062009
nucleic acid binding 1.05662964529454 bayes_pls_golite062009
binding 0.907487229190259 bayes_pls_golite062009
catalytic activity 0.878454819018611 bayes_pls_golite062009
DNA binding 0.828609700556836 bayes_pls_golite062009
nuclease activity 0.69721312877891 bayes_pls_golite062009
3'-5' exonuclease activity 0.477960254167 bayes_pls_golite062009
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle