YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|49611929, gi\|...
Organism:	Pectobacterium atrosepticum SCRI1043
Length:	213 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|49611929, gi|....

Description	E-value	Query Range	Subject Range
gi\|113461739, gi... - gi\|23467619\|ref\|ZP_00123199.1\| COG0800: 2-keto-3-deoxy-6-phosphogluconate aldolase [Haemophilus somn...	196.0	[0..1]	[213..1]
gi\|170718550, gi... - gi\|53728725\|ref\|ZP_00131830.2\| COG0800: 2-keto-3-deoxy-6-phosphogluconate aldolase [Haemophilus somn...	195.0	[0..1]	[213..1]
gi\|32033966 - gi\|32033966\|ref\|ZP_00134222.1\| COG0800: 2-keto-3-deoxy-6-phosphogluconate aldolase [Actinobacillus p...	190.0	[0..1]	[213..2]
gi\|108563462, gi... - gi\|108563462\|ref\|YP_627778.1\| 2-keto-3-deoxy-6-phosphogluconate aldolase [Helicobacter pylori HPAG1]...	189.0	[0..5]	[210..2]
gi\|144978596, gi... - gi\|145629093\|ref\|ZP_01784892.1\| keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase ... gi\|46133676 - gi\|46133676\|ref\|ZP_00157554.2\| COG0800: 2-keto-3-deoxy-6-phosphogluconate aldolase [Haemophilus infl... gi\|145271221, gi... - gi\|145639664\|ref\|ZP_01795267.1\| keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase ...	189.0	[0..1]	[212..1]
gi\|7436631 - pir\|\|C64657 2-dehydro-3-deoxy-phosphogluconate aldolase (EC 4.1.2.14) - Helicobacter pylori (strain ... gi\|2314248, gi\|1... - gi\|2314248\|gb\|AAD08142.1\| 2-keto-3-deoxy-6-phosphogluconate aldolase (eda) [Helicobacter pylori 2669...	189.0	[0..5]	[210..2]
gi\|54308469, gi\|... - gi\|54308469\|ref\|YP_129489.1\| keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase [Ph...	188.0	[0..6]	[212..3]
gi\|109714266, gi... - gi\|109947045\|ref\|YP_664273.1\| 2-dehydro-3-deoxyphosphogluconate aldolase / 4-hydroxy-2-oxoglutarate ...	186.0	[0..1]	[212..1]
gi\|90414792, gi\|... - gi\|90414792\|ref\|ZP_01222760.1\| putative 2-keto-3-deoxy-6-phosphogluconate aldolase [Photobacterium p...	186.0	[0..6]	[212..3]
gi\|53802784, gi\|... - gi\|53802784\|ref\|YP_112578.1\| 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3-deoxyphosphogluconate aldo...	186.0	[0..2]	[210..11]

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Predicted Domain #1

Region A:
Residues: [1-213]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKNWKTSAEQ ILTTGPVVPV IVVNKLEHAV PMAKALVAGG VRVLELTLRT DCAIDAIRAI  60
   61 AKEVPEAIVG AGTVTNPQQL AAVVEAGAQF AISPGLTEPL LKAAIEGNIP LIPGISTVSE 120
  121 LMLGMDYGLR EFKFFPAEAN GGVKALQAIG GPFAHIRFCP TGGITPNNYR DYLALKSVLC 180
  181 VGGSWLVPND ALESGDYARI TELAREAVAG AKA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	43.0
Match:	1euaA
Description:	KDPG aldolase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
2-dehydro-3-deoxy-phosphogluconate aldolase activity	3.5031381823147	bayes_pls_golite062009
catalytic activity	2.67031204377352	bayes_pls_golite062009
fructose-bisphosphate aldolase activity	0.840107349031025	bayes_pls_golite062009
lyase activity	0.740424046054758	bayes_pls_golite062009
transferase activity, transferring aldehyde or ketonic groups	0.643395146148785	bayes_pls_golite062009
transferase activity	0.464721888799972	bayes_pls_golite062009
aldehyde-lyase activity	0.351872954170322	bayes_pls_golite062009
transaldolase activity	0.337067552042715	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: