YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|50121297, gi\|...
Organism:	Pectobacterium atrosepticum SCRI1043
Length:	270 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|50121297, gi|....

Description	E-value	Query Range	Subject Range
gi\|229702266, gi... - gi\|229894793\|ref\|ZP_04509973.1\| septum site-determining protein [Yersinia pestis Pestoides A], gi\|22... gi\|229897498, gi... - gi\|229897498\|ref\|ZP_04512654.1\| septum site-determining protein [Yersinia pestis biovar Orientalis s... gi\|77635433, gi\|... - gi\|77635433\|ref\|ZP_00797518.1\| COG2894: Septum formation inhibitor-activating ATPase [Yersinia pesti... gi\|229898142, gi... - gi\|229898142\|ref\|ZP_04513291.1\| septum site-determining protein [Yersinia pestis biovar Orientalis s... gi\|153950682, gi... - gi\|77629143\|ref\|ZP_00791729.1\| COG2894: Septum formation inhibitor-activating ATPase [Yersinia pseud... gi\|108807456, gi... - gi\|108807456\|ref\|YP_651372.1\| cell division inhibitor MinD [Yersinia pestis Antiqua], gi\|108779369\|g... gi\|108811717, gi... - gi\|229902004\|ref\|ZP_04517125.1\| septum site-determining protein [Yersinia pestis Nepal516], gi\|22968... Q66AS0\|Q66AS0_YERPS - Septum site-determining protein - Yersinia pseudotuberculosis gi\|167419960, gi... - gi\|167419960\|ref\|ZP_02311713.1\| septum site-determining protein MinD [Yersinia pestis biovar Orienta... gi\|167056357, gi... - gi\|167424475\|ref\|ZP_02316228.1\| septum site-determining protein MinD [Yersinia pestis biovar Mediaev... gi\|170024356, gi... - gi\|170024356\|ref\|YP_001720861.1\| cell division inhibitor MinD [Yersinia pseudotuberculosis YPIII], g... gi\|186895429, gi... - gi\|186895429\|ref\|YP_001872541.1\| cell division inhibitor MinD [Yersinia pseudotuberculosis PB1/+], g... gi\|149365994, gi... - gi\|149365994\|ref\|ZP_01888029.1\| septum site-determining protein [Yersinia pestis CA88-4125], gi\|1492... gi\|145598341, gi... - gi\|145598341\|ref\|YP_001162417.1\| cell division inhibitor MinD [Yersinia pestis Pestoides F], gi\|1452... gi\|21959078, gi\|... - gi\|22126119\|ref\|NP_669542.1\| cell division inhibitor MinD [Yersinia pestis KIM], gi\|21959078\|gb\|AAM8... gi\|25300127 - pir\|\|AE0253 septum site-determining protein [imported] - Yersinia pestis (strain CO92) gi\|51589668, gi\|... - gi\|51596386\|ref\|YP_070577.1\| cell division inhibitor MinD [Yersinia pseudotuberculosis IP 32953], gi... gi\|45441722, gi\|... - gi\|45441722\|ref\|NP_993261.1\| cell division inhibitor MinD [Yersinia pestis biovar Microtus str. 9100... gi\|165919622, gi... - gi\|165928339\|ref\|ZP_02224171.1\| septum site-determining protein MinD [Yersinia pestis biovar Orienta... gi\|165938851, gi... - gi\|165938851\|ref\|ZP_02227405.1\| septum site-determining protein MinD [Yersinia pestis biovar Orienta... gi\|218929184, gi... - gi\|218929184\|ref\|YP_002347059.1\| cell division inhibitor MinD [Yersinia pestis CO92], gi\|16122316\|re... gi\|165991941, gi... - gi\|166009386\|ref\|ZP_02230284.1\| septum site-determining protein MinD [Yersinia pestis biovar Antiqua... gi\|166208082, gi... - gi\|166210902\|ref\|ZP_02236937.1\| septum site-determining protein MinD [Yersinia pestis biovar Antiqua... gi\|167401456, gi... - gi\|167401456\|ref\|ZP_02306953.1\| septum site-determining protein MinD [Yersinia pestis biovar Antiqua...	229.0	[0..1]	[270..1]
gi\|37526053, gi\|... - gi\|37526053\|ref\|NP_929397.1\| cell division inhibitor MinD [Photorhabdus luminescens subsp. laumondii...	228.0	[0..1]	[270..1]
gi\|90438964, gi\|... - gi\|90580079\|ref\|ZP_01235887.1\| putative septum site-determining protein MinD [Vibrio angustum S14], ...	228.0	[0..1]	[270..1]
gi\|229515341, gi... - gi\|229515341\|ref\|ZP_04404801.1\| septum site-determining protein MinD [Vibrio cholerae TMA 21], gi\|22... gi\|229507949, gi... - gi\|229507949\|ref\|ZP_04397454.1\| septum site-determining protein MinD [Vibrio cholerae BX 330286], gi... gi\|227082089, gi... - gi\|227082089\|ref\|YP_002810640.1\| septum site-determining protein MinD [Vibrio cholerae M66-2], gi\|22... gi\|229370149, gi... - gi\|229607494\|ref\|YP_002878142.1\| septum site-determining protein MinD [Vibrio cholerae MJ-1236], gi\|... gi\|229340799, gi... - gi\|229521874\|ref\|ZP_04411291.1\| septum site-determining protein MinD [Vibrio cholerae TM 11079-80], ... gi\|229343641, gi... - gi\|229518952\|ref\|ZP_04408395.1\| septum site-determining protein MinD [Vibrio cholerae RC9], gi\|22934... gi\|153829258, gi... - gi\|153829258\|ref\|ZP_01981925.1\| septum site-determining protein MinD [Vibrio cholerae 623-39], gi\|14... gi\|153826373, gi... - gi\|153826373\|ref\|ZP_01979040.1\| septum site-determining protein MinD [Vibrio cholerae MZO-2], gi\|149... gi\|9656499, gi\|1... - gi\|9656499\|gb\|AAF95108.1\| septum site-determining protein MinD [Vibrio cholerae O1 biovar El Tor str... gi\|227118407, gi... - gi\|227118407\|ref\|YP_002820303.1\| septum site-determining protein MinD [Vibrio cholerae O395], gi\|227... gi\|11277888 - pir\|\|C82136 septum site-determining protein MinD VC1960 [imported] - Vibrio cholerae (strain N16961 ... gi\|197751614, gi... - gi\|254286889\|ref\|ZP_04961841.1\| septum site-determining protein MinD [Vibrio cholerae AM-19226], gi\|... gi\|121728627, gi... - gi\|121728627\|ref\|ZP_01681646.1\| septum site-determining protein MinD [Vibrio cholerae V52], gi\|12162... gi\|121590652, gi... - gi\|121590652\|ref\|ZP_01677986.1\| septum site-determining protein MinD [Vibrio cholerae 2740-80], gi\|1... gi\|153803707, gi... - gi\|153803707\|ref\|ZP_01958293.1\| septum site-determining protein MinD [Vibrio cholerae MZO-3], gi\|124... gi\|153217399, gi... - gi\|153217399\|ref\|ZP_01951150.1\| septum site-determining protein MinD [Vibrio cholerae 1587], gi\|1241... gi\|225354512, gi... - gi\|254226805\|ref\|ZP_04920377.1\| septum site-determining protein MinD [Vibrio cholerae V51], gi\|22535... gi\|254849046, gi... - gi\|254849046\|ref\|ZP_05238396.1\| septum site-determining protein MinD [Vibrio cholerae MO10], gi\|2548... gi\|229351780, gi... - gi\|229511815\|ref\|ZP_04401294.1\| septum site-determining protein MinD [Vibrio cholerae B33], gi\|22935... gi\|126509176, gi... - gi\|153820285\|ref\|ZP_01972952.1\| septum site-determining protein MinD [Vibrio cholerae NCTC 8457], gi...	227.0	[0..1]	[270..7]
gi\|75827274 - gi\|75827274\|ref\|ZP_00756709.1\| COG2894: Septum formation inhibitor-activating ATPase [Vibrio cholera... gi\|229529016, gi... - gi\|229529016\|ref\|ZP_04418406.1\| septum site-determining protein MinD [Vibrio cholerae 12129(1)], gi\|... gi\|75830768, gi\|... - gi\|75830768\|ref\|ZP_00760040.1\| COG2894: Septum formation inhibitor-activating ATPase [Vibrio cholera... gi\|75815065 - gi\|75815065\|ref\|ZP_00745593.1\| COG2894: Septum formation inhibitor-activating ATPase [Vibrio cholera... gi\|75818634, gi\|... - gi\|75818634\|ref\|ZP_00748771.1\| COG2894: Septum formation inhibitor-activating ATPase [Vibrio cholera... tr\|A0A086SPV0\|A0... - Site-determining protein OS=Vibrio cholerae GN=minD PE=3 SV=1	227.0	[0..1]	[270..1]
gi\|238782532, gi... - gi\|238782532\|ref\|ZP_04626563.1\| Septum site-determining protein minD [Yersinia bercovieri ATCC 43970... gi\|77962230, gi\|... - gi\|77962230\|ref\|ZP_00826053.1\| COG2894: Septum formation inhibitor-activating ATPase [Yersinia molla...	227.0	[0..1]	[270..1]
gi\|149745909, gi... - gi\|153840427\|ref\|ZP_01993094.1\| septum site-determining protein MinD [Vibrio parahaemolyticus AQ3810... gi\|28805860, gi\|... - gi\|28897647\|ref\|NP_797252.1\| septum site-determining protein MinD [Vibrio parahaemolyticus RIMD 2210... gi\|28805860 - gi\|28805860\|dbj\|BAC59136.1\| septum site-determining protein MinD [Vibrio parahaemolyticus RIMD 22106...	226.0	[0..1]	[270..1]
gi\|238794478, gi... - gi\|77977705\|ref\|ZP_00833147.1\| COG2894: Septum formation inhibitor-activating ATPase [Yersinia inter...	226.0	[0..1]	[270..1]
gi\|78363795, gi\|... - gi\|78485509\|ref\|YP_391434.1\| septum site-determining protein MinD [Thiomicrospira crunogena XCL-2], ...	226.0	[0..1]	[269..1]
gi\|85059313, gi\|... - gi\|85059313\|ref\|YP_455015.1\| cell division inhibitor MinD [Sodalis glossinidius str. 'morsitans'], g...	224.0	[0..1]	[270..1]

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Predicted Domain #1

Region A:
Residues: [1-270]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARIIVVTSG KGGVGKTTSS AAIATGLAQK GKKTVVIDFD IGLRNLDLIM GCERRVVYDF  60
   61 VNVIQGDATL NQALIKDKRT DNLYILPASQ TRDKDALTYE GVEKILNDLG DMNFDFIVCD 120
  121 SPAGIETGAL MALYFADEAI ITTNPEVSSV RDSDRILGIL SSKSRRAERS EDPIKEHLLL 180
  181 TRYNPGRVNR GDMLSMEDVL EILRIPLIGV IPEDQSVLRA SNQGEPVILD AEADAGKAYS 240
  241 DTVERLLGEE RPFRFIEEEK KGFLKRLFGG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	36.0
Match:	1hyqA
Description:	Cell division regulator MinD
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
nucleoside-triphosphatase activity	2.50267116518023	bayes_pls_golite062009
pyrophosphatase activity	2.42957469111629	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides	2.40943522107938	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	2.40733363368781	bayes_pls_golite062009
binding	1.8576045268999	bayes_pls_golite062009
hydrolase activity	1.10968068468793	bayes_pls_golite062009
catalytic activity	0.458437698837681	bayes_pls_golite062009
protein binding	0.378225828131122	bayes_pls_golite062009
nucleotide binding	0.0601614967638421	bayes_pls_golite062009
purine nucleotide binding	0.0518926528648858	bayes_pls_golite062009
purine ribonucleotide binding	0.0231586743339878	bayes_pls_golite062009
ribonucleotide binding	0.0231035204040646	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: