YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|49611795, gi\|...
Organism:	Pectobacterium atrosepticum SCRI1043
Length:	215 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|49611795, gi|....

Description	E-value	Query Range	Subject Range
gi\|238794512, gi... - gi\|77977679\|ref\|ZP_00833121.1\| COG1335: Amidases related to nicotinamidase [Yersinia intermedia ATCC...	221.0	[0..1]	[215..1]
gi\|238797351, gi... - gi\|77962069\|ref\|ZP_00825895.1\| COG1335: Amidases related to nicotinamidase [Yersinia mollaretii ATCC...	218.0	[0..1]	[212..1]
gi\|77629169, gi\|... - gi\|77629169\|ref\|ZP_00791755.1\| COG1335: Amidases related to nicotinamidase [Yersinia pseudotuberculo...	215.0	[0..1]	[214..1]
gi\|51589694, gi\|... - gi\|51596412\|ref\|YP_070603.1\| nicotinamidase/pyrazinamidase [Yersinia pseudotuberculosis IP 32953], g... gi\|170024327, gi... - gi\|170024327\|ref\|YP_001720832.1\| nicotinamidase/pyrazinamidase [Yersinia pseudotuberculosis YPIII], ... gi\|186895457, gi... - gi\|186895457\|ref\|YP_001872569.1\| nicotinamidase/pyrazinamidase [Yersinia pseudotuberculosis PB1/+], ... Q66AP4\|Q66AP4_YERPS - Putative pyrazinamidase/nicotinamidase - Yersinia pseudotuberculosis	215.0	[0..1]	[214..1]
gi\|167420273, gi... - gi\|167420273\|ref\|ZP_02312026.1\| pyrazinamidase/nicotinamidase [Yersinia pestis biovar Orientalis str... gi\|167054443, gi... - gi\|167426567\|ref\|ZP_02318320.1\| pyrazinamidase/nicotinamidase [Yersinia pestis biovar Mediaevalis st... gi\|167470631 - gi\|167470631\|ref\|ZP_02335335.1\| pyrazinamidase/nicotinamidase [Yersinia pestis FV-1] gi\|165912682, gi... - gi\|89101589\|ref\|ZP_01174316.1\| COG1335: Amidases related to nicotinamidase [Yersinia pestis biovar O... gi\|108807513, gi... - gi\|108807513\|ref\|YP_651429.1\| nicotinamidase/pyrazinamidase [Yersinia pestis Antiqua], gi\|108779426\|... gi\|165920307, gi... - gi\|165927693\|ref\|ZP_02223525.1\| pyrazinamidase/nicotinamidase [Yersinia pestis biovar Orientalis str... gi\|108775437, gi... - gi\|229902084\|ref\|ZP_04517205.1\| nicotinamidase and pyrazinamidase [Yersinia pestis Nepal516], gi\|229... gi\|165991868, gi... - gi\|166009313\|ref\|ZP_02230211.1\| pyrazinamidase/nicotinamidase [Yersinia pestis biovar Antiqua str. E... gi\|149292330, gi... - gi\|149365917\|ref\|ZP_01887952.1\| putative pyrazinamidase/nicotinamidase [Yersinia pestis CA88-4125], ... gi\|166211140, gi... - gi\|166211140\|ref\|ZP_02237175.1\| pyrazinamidase/nicotinamidase [Yersinia pestis biovar Antiqua str. B... gi\|162351481, gi... - gi\|77634445\|ref\|ZP_00796545.1\| COG1335: Amidases related to nicotinamidase [Yersinia pestis Angola],... gi\|145598271, gi... - gi\|145598271\|ref\|YP_001162347.1\| nicotinamidase/pyrazinamidase [Yersinia pestis Pestoides F], gi\|145... gi\|167401379, gi... - gi\|167401379\|ref\|ZP_02306876.1\| pyrazinamidase/nicotinamidase [Yersinia pestis biovar Antiqua str. U... gi\|229894834, gi... - gi\|229894834\|ref\|ZP_04510014.1\| nicotinamidase and pyrazinamidase [Yersinia pestis Pestoides A], gi\|... gi\|229693915, gi... - gi\|229897578\|ref\|ZP_04512734.1\| nicotinamidase and pyrazinamidase [Yersinia pestis biovar Orientalis... gi\|25302276 - pir\|\|AD0263 nicotinamidase (EC 3.5.1.19) [imported] - Yersinia pestis (strain CO92) gi\|229898223, gi... - gi\|229898223\|ref\|ZP_04513371.1\| nicotinamidase and pyrazinamidase [Yersinia pestis biovar Orientalis... gi\|45441761, gi\|... - gi\|45441761\|ref\|NP_993300.1\| nicotinamidase/pyrazinamidase [Yersinia pestis biovar Microtus str. 910... gi\|21959002, gi\|... - gi\|22126050\|ref\|NP_669473.1\| nicotinamidase/pyrazinamidase [Yersinia pestis KIM], gi\|21959002\|gb\|AAM... gi\|15980164, gi\|... - gi\|218929260\|ref\|YP_002347135.1\| nicotinamidase/pyrazinamidase [Yersinia pestis CO92], gi\|16122392\|r...	214.0	[0..1]	[214..1]
gi\|238786165, gi... - gi\|77956446\|ref\|ZP_00820544.1\| COG1335: Amidases related to nicotinamidase [Yersinia bercovieri ATCC...	213.0	[0..1]	[211..1]
gi\|73855391, gi\|... - gi\|74311914\|ref\|YP_310333.1\| hypothetical protein SSON_1387 [Shigella sonnei Ss046], gi\|73855391\|gb\|...	211.0	[0..3]	[209..10]
gi\|81240933, gi\|... - gi\|82776785\|ref\|YP_403134.1\| hypothetical protein SDY_1505 [Shigella dysenteriae Sd197], gi\|81240933...	211.0	[0..3]	[209..10]
gi\|75227739 - gi\|75227739\|ref\|ZP_00714471.1\| COG1335: Amidases related to nicotinamidase [Escherichia coli B7A] gi\|81245238, gi\|... - gi\|82543827\|ref\|YP_407774.1\| hypothetical protein SBO_1319 [Shigella boydii Sb227], gi\|81245238\|gb\|A... gi\|75177304 - gi\|75177304\|ref\|ZP_00697393.1\| COG1335: Amidases related to nicotinamidase [Shigella boydii BS512]	211.0	[0..3]	[209..10]
gi\|188487756, gi... - gi\|188492557\|ref\|ZP_02999827.1\| pyrazinamidase/nicotinamidase [Escherichia coli 53638], gi\|188487756... gi\|194422494, gi... - gi\|194438484\|ref\|ZP_03070573.1\| pyrazinamidase/nicotinamidase [Escherichia coli 101-1], gi\|194422494... gi\|254161826, gi... - gi\|254161826\|ref\|YP_003044934.1\| nicotinamidase/pyrazinamidase [Escherichia coli B str. REL606], gi\|... EG11135 - nicotinamidase /pyrazinamidase / Pyrazinamidase /nicotinamidase gi\|169889260, gi... - gi\|170081425\|ref\|YP_001730745.1\| nicotinamidase/pyrazinamidase [Escherichia coli str. K-12 substr. D... EG11135 - nicotinamidase /pyrazinamidase / Pyrazinamidase /nicotinamidase gi\|251785216, gi... - gi\|251785216\|ref\|YP_002999520.1\| hypothetical protein B21_01725 [Escherichia coli BL21], gi\|24237748... gi\|253324321, gi... - gi\|254288614\|ref\|YP_003054362.1\| nicotinamidase/pyrazinamidase [Escherichia coli BL21(DE3)], gi\|2539... PNCA_ECOLI - Pyrazinamidase/nicotinamidase (EC 3.5.1.-) (EC 3.5.1.19) (PZAase) (Nicotine deamidase) (NAMase) - Es... gi\|89108607, gi\|... - gi\|89108607\|ref\|AP_002387.1\| nicotinamidase/pyrazinamidase [Escherichia coli str. K-12 substr. W3110... gi\|157066910, gi... - gi\|157161230\|ref\|YP_001458548.1\| nicotinamidase/pyrazinamidase [Escherichia coli HS], gi\|157066910\|g... gi\|238861893, gi... - gi\|238900982\|ref\|YP_002926778.1\| nicotinamidase/pyrazinamidase [Escherichia coli BW2952], gi\|2388618...	211.0	[0..3]	[209..4]

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Predicted Domain #1

Region A:
Residues: [1-215]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKALLLVDL QNDFCPEGAL AVNEGDRVIE VANRAIDACL AAGVAVIASQ DWHPTNHGSF  60
   61 AVNANTKVGE IGELNGWPQI WWPVHCVQGT TGADFHPALN QSAIQWIVQK GTQPEIDSYS 120
  121 AFFDNGHRVK TELDAWLRAN HITHLTILGL ATDYCIKFSV LDAIALGYHT EVLVDGCRGV 180
  181 NLSPDDSESA LQEMAQRGAT LTDMTQFLTT LSSVR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	47.69897
Match:	1ilwA
Description:	Pyrazinamidase/nicotinamidase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
nicotinamidase activity	2.590271821288	bayes_pls_golite062009
binding	1.80707112356899	bayes_pls_golite062009
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	1.33901087189475	bayes_pls_golite062009
catalytic activity	0.992051062697807	bayes_pls_golite062009
protein binding	0.343971697425971	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: