YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|49611325, gi\|...
Organism:	Pectobacterium atrosepticum SCRI1043
Length:	287 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|49611325, gi|....

Description	E-value	Query Range	Subject Range
gi\|45181607 - gi\|45181607\|gb\|AAS55457.1\| BglT [Pectobacterium carotovorum subsp. carotovorum]	257.0	[0..1]	[287..1]
ARBG_DICCH - Beta-glucoside operon antiterminator OS=Dickeya chrysanthemi GN=arbG PE=3 SV=1	245.0	[0..1]	[281..1]
gi\|73857740, gi\|... - gi\|74314263\|ref\|YP_312682.1\| transcriptional antiterminator BglG [Shigella sonnei Ss046], gi\|7385774...	240.0	[0..1]	[277..3]
gi\|193063836, gi... - gi\|75258262\|ref\|ZP_00729710.1\| COG3711: Transcriptional antiterminator [Escherichia coli E22], gi\|19... gi\|75210667, gi\|... - gi\|75210667\|ref\|ZP_00710808.1\| COG3711: Transcriptional antiterminator [Escherichia coli B171], gi\|1...	239.0	[0..1]	[277..3]
gi\|253975576, gi... - gi\|254163675\|ref\|YP_003046783.1\| transcriptional antiterminator of the bgl operon [Escherichia coli ... gi\|194435709, gi... - gi\|83588412\|ref\|ZP_00927036.1\| COG3711: Transcriptional antiterminator [Escherichia coli 101-1], gi\|... gi\|254290425, gi... - gi\|254290425\|ref\|YP_003056173.1\| transcriptional antiterminator of the bgl operon [Escherichia coli ... gi\|251786988, gi... - gi\|251786988\|ref\|YP_003001292.1\| hypothetical protein B21_03551 [Escherichia coli BL21], gi\|24237926...	238.0	[0..1]	[277..3]
gi\|221325400 - gi\|221325400\|ref\|ZP_03606694.1\| BglG family transcriptional antiterminator [Bacillus subtilis subsp.... gi\|221321116 - gi\|221321116\|ref\|ZP_03602410.1\| BglG family transcriptional antiterminator [Bacillus subtilis subsp.... gi\|221316204 - gi\|221316204\|ref\|ZP_03598009.1\| BglG family transcriptional antiterminator [Bacillus subtilis subsp.... LICT_BACSU - Transcription antiterminator LicT OS=Bacillus subtilis (strain 168) GN=licT PE=1 SV=1 LICT_BACSU - Transcription antiterminator LicT OS=Bacillus subtilis GN=licT PE=1 SV=1	238.0	[0..1]	[276..1]
gi\|169757168, gi... - gi\|170022240\|ref\|YP_001727194.1\| transcriptional antiterminator BglG [Escherichia coli ATCC 8739], g... gi\|218556290, gi... - gi\|218556290\|ref\|YP_002389204.1\| transcriptional antiterminator BglG [Escherichia coli IAI1], gi\|218... BGLG_ECOLI - Cryptic beta-glucoside bgl operon antiterminator - Escherichia coli gi\|169891060, gi... - gi\|170083225\|ref\|YP_001732545.1\| transcriptional antiterminator of the bgl operon [Escherichia coli ... gi\|238863682, gi... - gi\|238902814\|ref\|YP_002928610.1\| transcriptional antiterminator of the bgl operon [Escherichia coli ... EG10116 - transcriptional antiterminator of the bgl operon / Transcription antiterminator for cryptic bglGFBH ... gi\|124499468, gi... - gi\|124530063\|ref\|ZP_01700846.1\| transcriptional antiterminator, BglG [Escherichia coli B], gi\|124499... EG10116 - transcriptional antiterminator of the bgl operon / Transcription antiterminator for cryptic bglGFBH ... gi\|157156505, gi... - gi\|75188478\|ref\|ZP_00701745.1\| COG3711: Transcriptional antiterminator [Escherichia coli E24377A], g... gi\|157163203, gi... - gi\|75197619\|ref\|ZP_00707689.1\| COG3711: Transcriptional antiterminator [Escherichia coli HS], gi\|157... gi\|188495336, gi... - gi\|75514211\|ref\|ZP_00736519.1\| COG3711: Transcriptional antiterminator [Escherichia coli 53638], gi\|... gi\|85676315, gi\|... - gi\|89110284\|ref\|AP_004064.1\| transcriptional antiterminator of the bgl operon [Escherichia coli str.... gi\|191165822, gi... - gi\|75231007\|ref\|ZP_00717442.1\| COG3711: Transcriptional antiterminator [Escherichia coli B7A], gi\|19... gi\|192957473, gi... - gi\|75236452\|ref\|ZP_00720548.1\| COG3711: Transcriptional antiterminator [Escherichia coli E110019], g...	238.0	[0..1]	[277..3]
gi\|16080959, gi\|... - gi\|2636454\|emb\|CAB15944.1\| transcriptional antiterminator (BglG family) [Bacillus subtilis subsp. su... gi\|665992 - gi\|665992\|dbj\|BAA11696.1\| LicT antiterminator [Bacillus subtilis]	238.0	[0..1]	[276..1]
gi\|218367567, gi... - gi\|218560798\|ref\|YP_002393711.1\| transcriptional antiterminator BglG [Escherichia coli S88], gi\|2183... gi\|115515120, gi... - gi\|117625996\|ref\|YP_859319.1\| transcriptional antiterminator BglG [Escherichia coli APEC O1], gi\|115...	237.0	[0..1]	[277..3]
gi\|110617130, gi... - gi\|110807582\|ref\|YP_691102.1\| transcriptional antiterminator BglG [Shigella flexneri 5 str. 8401], g...	237.0	[0..1]	[277..3]

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Predicted Domain #1

Region A:
Residues: [1-67]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKIAKILNNN VVTVIDENNN ESVVMGRGLG FKKHSGDLLD ETLIERVFVM KSEELTSRLQ  60
   61 ELLSEIP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	7.0
Match:	1l1cA
Description:	LicT
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [68-287]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDVITTADKI ILLAKARLPG KLQNSVYISL TDHCHFAIER HKQGVDIRNV LLWEIKRLYP  60
   61 KEFAVGLEAL DIIEQRLSVR LPEDEAGFIA LHLVNAQLDS EMPEVLQITK IMQEILNIVK 120
  121 YQLSLDYNEQ ALSYHRFVTH LKFFAQRLIG KSTVFSDDES LHDVVKERYP LSYRCAEKIQ 180
  181 AHIVQKYSYT LTKEELMFLT IHIERVRTEG QEKIEPGDGE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	48.522879
Match:	1tlvA
Description:	Structure of the native and inactive LicT PRD from B. subtilis
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
transcription regulator activity	2.56369131794526	bayes_pls_golite062009
transcription antiterminator activity	1.04498481068613	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: