YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|49480470, gi\|...
Organism:	Bacillus thuringiensis serovar konkukian str. 97-27
Length:	173 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|49480470, gi|....

Description	E-value	Query Range	Subject Range
gi\|163943153, gi... - gi\|89208000\|ref\|ZP_01186525.1\| Single-strand binding protein [Bacillus weihenstephanensis KBAB4], gi...	2.0E-54	[1..173]	[1..173]
gi\|225788295, gi... - gi\|225867454\|ref\|YP_002752832.1\| single-stranded DNA-binding protein [Bacillus cereus 03BB102], gi\|2... gi\|65317454 - gi\|65317454\|ref\|ZP_00390413.1\| COG0629: Single-stranded DNA-binding protein [Bacillus anthracis str.... gi\|118480501, gi... - gi\|118480501\|ref\|YP_897652.1\| single-stranded DNA-binding protein [Bacillus thuringiensis str. Al Ha... gi\|170666569, gi... - gi\|170689467\|ref\|ZP_02880657.1\| single-stranded DNA-binding protein [Bacillus anthracis str. A0465],... gi\|170127596, gi... - gi\|170707600\|ref\|ZP_02898053.1\| single-stranded DNA-binding protein [Bacillus anthracis str. A0389],... gi\|167510309, gi... - gi\|167641755\|ref\|ZP_02399998.1\| single-stranded DNA-binding protein [Bacillus anthracis str. A0193],...	2.0E-54	[1..173]	[4..176]
gi\|47568672, gi\|... - gi\|47568672\|ref\|ZP_00239369.1\| single-strand DNA binding protein [Bacillus cereus G9241], gi\|4755466... gi\|51978750, gi\|... - gi\|52145281\|ref\|YP_086738.1\| single-strand DNA-binding protein [Bacillus cereus E33L], gi\|51978750\|g... gi\|30265491, gi\|... - gi\|30265491\|ref\|NP_847868.1\| single-strand DNA-binding protein [Bacillus anthracis str. Ames], gi\|30... gi\|47506207, gi\|... - gi\|47531059\|ref\|YP_022408.1\| single-strand DNA-binding protein [Bacillus anthracis str. 'Ames Ancest... SSB_BACAN - Single-stranded DNA-binding protein OS=Bacillus anthracis GN=ssb PE=3 SV=1 gi\|196036124, gi... - gi\|196036124\|ref\|ZP_03103524.1\| single-stranded DNA-binding protein [Bacillus cereus W], gi\|19599129... gi\|196041929, gi... - gi\|196041929\|ref\|ZP_03109216.1\| single-stranded DNA-binding protein [Bacillus cereus NVH0597-99], gi... gi\|164711232, gi... - gi\|165873020\|ref\|ZP_02217641.1\| single-stranded DNA-binding protein [Bacillus anthracis str. A0488],... gi\|190569296, gi... - gi\|190569296\|ref\|ZP_03022190.1\| single-stranded DNA-binding protein [Bacillus anthracis Tsiankovskii... gi\|196023740, gi... - gi\|196045533\|ref\|ZP_03112764.1\| single-stranded DNA-binding protein [Bacillus cereus 03BB108], gi\|19... gi\|222098950, gi... - gi\|222098950\|ref\|YP_002533008.1\| single-stranded DNA-binding protein [Bacillus cereus Q1], gi\|221243... gi\|228930479, gi... - gi\|228930479\|ref\|ZP_04093479.1\| Single-stranded DNA-binding protein [Bacillus thuringiensis serovar ... gi\|228918085, gi... - gi\|228918085\|ref\|ZP_04081613.1\| Single-stranded DNA-binding protein [Bacillus thuringiensis serovar ... gi\|228949195, gi... - gi\|228949195\|ref\|ZP_04111463.1\| Single-stranded DNA-binding protein [Bacillus thuringiensis serovar ... gi\|228936753, gi... - gi\|228936753\|ref\|ZP_04099544.1\| Single-stranded DNA-binding protein [Bacillus thuringiensis serovar ... gi\|228688831, gi... - gi\|229094584\|ref\|ZP_04225651.1\| Single-stranded DNA-binding protein [Bacillus cereus Rock3-42], gi\|2... gi\|228771013, gi... - gi\|228988701\|ref\|ZP_04148786.1\| Single-stranded DNA-binding protein [Bacillus thuringiensis serovar ... gi\|228641240, gi... - gi\|229142222\|ref\|ZP_04270746.1\| Single-stranded DNA-binding protein [Bacillus cereus BDRD-ST26], gi\|... gi\|228658477, gi... - gi\|229124976\|ref\|ZP_04254150.1\| Single-stranded DNA-binding protein [Bacillus cereus 95/8201], gi\|22... gi\|228595770, gi... - gi\|229187702\|ref\|ZP_04314838.1\| Single-stranded DNA-binding protein [Bacillus cereus BGSC 6E1], gi\|2... gi\|229159033, gi... - gi\|229159033\|ref\|ZP_04287089.1\| Single-stranded DNA-binding protein [Bacillus cereus ATCC 4342], gi\|... gi\|254687086 - gi\|254687086\|ref\|ZP_05150944.1\| single-stranded DNA-binding protein [Bacillus anthracis str. CNEVA-9... gi\|229199603, gi... - gi\|229199603\|ref\|ZP_04326263.1\| Single-stranded DNA-binding protein [Bacillus cereus m1293], gi\|2285... gi\|254761373 - gi\|254761373\|ref\|ZP_05213395.1\| single-stranded DNA-binding protein [Bacillus anthracis str. Austral... gi\|254742143 - gi\|254742143\|ref\|ZP_05199830.1\| single-stranded DNA-binding protein [Bacillus anthracis str. Kruger ...	8.0E-54	[2..173]	[1..172]
gi\|75763191, gi\|... - gi\|75763191\|ref\|ZP_00742956.1\| Single-strand DNA binding protein [Bacillus thuringiensis serovar isr...	2.0E-53	[1..173]	[4..176]
SSB_BACCR - Single-stranded DNA-binding protein OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / JCM 2152 / NBRC... gi\|218163689, gi... - gi\|218235732\|ref\|YP_002370248.1\| single-stranded DNA-binding protein [Bacillus cereus B4264], gi\|218... gi\|206970006, gi... - gi\|206970006\|ref\|ZP_03230959.1\| single-stranded DNA-binding protein [Bacillus cereus AH1134], gi\|206...	4.0E-53	[1..173]	[1..170]
gi\|228803952, gi... - gi\|228955724\|ref\|ZP_04117719.1\| Single-stranded DNA-binding protein [Bacillus thuringiensis serovar ... gi\|228924218, gi... - gi\|228924218\|ref\|ZP_04087489.1\| Single-stranded DNA-binding protein [Bacillus thuringiensis serovar ... gi\|228670565, gi... - gi\|229112886\|ref\|ZP_04242417.1\| Single-stranded DNA-binding protein [Bacillus cereus Rock1-15], gi\|2... gi\|228710184, gi... - gi\|229072938\|ref\|ZP_04206134.1\| Single-stranded DNA-binding protein [Bacillus cereus F65185], gi\|228... gi\|229051142, gi... - gi\|229051142\|ref\|ZP_04194686.1\| Single-stranded DNA-binding protein [Bacillus cereus AH676], gi\|2287... gi\|228961737, gi... - gi\|228961737\|ref\|ZP_04123340.1\| Single-stranded DNA-binding protein [Bacillus thuringiensis serovar ... gi\|42740601, gi\|... - gi\|42784669\|ref\|NP_981916.1\| single-strand DNA-binding protein [Bacillus cereus ATCC 10987], gi\|4274... gi\|229193724, gi... - gi\|229193724\|ref\|ZP_04320665.1\| Single-stranded DNA-binding protein [Bacillus cereus ATCC 10876], gi... gi\|229181719, gi... - gi\|229181719\|ref\|ZP_04309042.1\| Single-stranded DNA-binding protein [Bacillus cereus 172560W], gi\|22... gi\|229153632, gi... - gi\|229153632\|ref\|ZP_04281808.1\| Single-stranded DNA-binding protein [Bacillus cereus m1550], gi\|2286... gi\|229148023, gi... - gi\|229148023\|ref\|ZP_04276362.1\| Single-stranded DNA-binding protein [Bacillus cereus BDRD-ST24], gi\|...	6.0E-52	[2..173]	[1..169]
gi\|152977672, gi... - gi\|89202800\|ref\|ZP_01181508.1\| Single-strand binding protein [Bacillus cereus subsp. cytotoxis NVH 3...	2.0E-51	[1..173]	[1..164]
gi\|221086942, gi... - gi\|221086942\|ref\|ZP_03556482.1\| single-strand binding protein [Geobacillus sp. Y412MC61], gi\|2207089... gi\|229497917, gi... - gi\|229497917\|ref\|ZP_04391616.1\| single-strand binding protein [Geobacillus sp. Y412MC52], gi\|2293313... gi\|56381858, gi\|... - gi\|56422016\|ref\|YP_149334.1\| single-strand DNA-binding protein [Geobacillus kaustophilus HTA426], gi...	4.0E-49	[1..173]	[1..164]
SSB_BACHD - Single-stranded DNA-binding protein OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7... SSB_BACHD - Single-stranded DNA-binding protein OS=Bacillus halodurans GN=ssb PE=3 SV=1	3.0E-47	[1..173]	[1..168]
gi\|42518092, gi\|... - gi\|42518092\|ref\|NP_964022.1\| single-strand binding protein [Lactobacillus johnsonii NCC 533], gi\|415...	6.0E-47	[1..173]	[1..172]

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Predicted Domain #1

Region A:
Residues: [1-173]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMNRVILVGR LTKDPDLRYT PNGVAVATFT LAVNRAFANQ QGEREADFIN CVIWRKQAEN  60
   61 VANYLKKGSL AGVDGRLQTR NYEGQDGKRV YVTEVLAESV QFLEPRNGGG EQRGSFNQQP 120
  121 SGAGFGNQSS NPFGQSSNSG NQGNQGNSGF TKNDDPFSNV GQPIDISDDD LPF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	46.09691
Match:	1eqqA
Description:	SINGLE STRANDED DNA BINDING PROTEIN AND SSDNA COMPLEX
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
nucleic acid binding	2.26271782657431	bayes_pls_golite062009
binding	2.01819468874386	bayes_pls_golite062009
DNA binding	1.81052012500635	bayes_pls_golite062009
single-stranded DNA binding	1.38758756313423	bayes_pls_golite062009
structure-specific DNA binding	1.30327082958682	bayes_pls_golite062009
transcription regulator activity	0.537716356194117	bayes_pls_golite062009
structural constituent of ribosome	0.0989196136046104	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: