YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30255253, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	371 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30255253, gi|....

Description	E-value	Query Range	Subject Range
gi\|51977508, gi\|... - gi\|52144039\|ref\|YP_082790.1\| carbohydrate diacid regulator [Bacillus cereus E33L], gi\|51977508\|gb\|AA...	5.0E-84	[1..371]	[1..371]
gi\|228944995, gi... - gi\|228944995\|ref\|ZP_04107356.1\| Transcriptional regulator [Bacillus thuringiensis serovar monterrey ... gi\|65318664 - gi\|65318664\|ref\|ZP_00391623.1\| COG3835: Sugar diacid utilization regulator [Bacillus anthracis str. ... gi\|228932677, gi... - gi\|228932677\|ref\|ZP_04095551.1\| Transcriptional regulator [Bacillus thuringiensis serovar andalousie... gi\|229120936, gi... - gi\|229120936\|ref\|ZP_04250178.1\| Transcriptional regulator [Bacillus cereus 95/8201], gi\|228662596\|gb...	9.0E-84	[1..371]	[4..374]
gi\|42736404, gi\|... - gi\|42780485\|ref\|NP_977732.1\| transcriptional regulator, putative [Bacillus cereus ATCC 10987], gi\|42...	1.0E-82	[1..371]	[1..371]
gi\|29894993, gi\|... - gi\|30019449\|ref\|NP_831080.1\| carbohydrate diacid regulator [Bacillus cereus ATCC 14579], gi\|29894993... gi\|218233562, gi... - gi\|218233562\|ref\|YP_002366080.1\| putative carbohydrate diacid regulator [Bacillus cereus B4264], gi\|...	1.0E-82	[1..371]	[1..371]
gi\|89151094, gi\|... - gi\|89200933\|ref\|ZP_01179682.1\| Helix-turn-helix, Fis-type [Bacillus cereus subsp. cytotoxis NVH 391-...	1.0E-82	[1..371]	[1..371]
gi\|47556736, gi\|... - gi\|47566183\|ref\|ZP_00237211.1\| carbohydrate diacid regulator [Bacillus cereus G9241], gi\|47556736\|gb...	4.0E-82	[1..371]	[1..371]
gi\|75760002, gi\|... - gi\|75760002\|ref\|ZP_00740069.1\| Carbohydrate diacid regulator [Bacillus thuringiensis serovar israele...	7.0E-82	[1..371]	[4..374]
gi\|89157537, gi\|... - gi\|89204476\|ref\|ZP_01183053.1\| Helix-turn-helix, Fis-type [Bacillus weihenstephanensis KBAB4], gi\|89...	1.0E-79	[1..371]	[1..371]
gi\|23100285, gi\|... - gi\|23100285\|ref\|NP_693752.1\| hypothetical protein OB2830 [Oceanobacillus iheyensis HTE831], gi\|22778...	3.0E-77	[6..364]	[6..366]
gi\|28808253 - gi\|28808253\|dbj\|BAC61458.1\| conserved hypothetical protein [Vibrio parahaemolyticus RIMD 2210633] gi\|28899970, gi\|... - gi\|28899970\|ref\|NP_799625.1\| hypothetical protein VPA0115 [Vibrio parahaemolyticus RIMD 2210633], gi...	2.0E-72	[1..359]	[3..376]

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Predicted Domain #1

Region A:
Residues: [1-136]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLFPDLANKI VREVRRLIKE NIIIINIQGV IIASTDIERI GQFHEGALRC AKQKKTVIIT  60
   61 KEDERRLHGV KAGMNLPLLF HDEVIGVIGI TGEPENISQY GEILRKMTEL LIHENYFLEQ 120
  121 LELEHRSYEA FVFDWL

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.13
Match:	2gx5A
Description:	No description for 2gx5A was found.

Predicted Domain #2

Region A:
Residues: [137-278]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QNTDWSPSFL DRAKTLGIDL YKKKQLILFS IDQNDTMLQR KIWQHVRNLL TKEHLFVRWG  60
   61 NDRFILFTAM SSKEQTYQFL KRLKQDCETL FSIPLYIGIG QSVTPSNMNL SYEQALQALS 120
  121 VSLATKKIVF NDDLRLEMCL QD

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.719	N/A	N/A	d.110.4	SNARE-like
View	Download	0.656	N/A	N/A	c.23.5	Flavoproteins
View	Download	0.606	N/A	N/A	d.146.1	Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain
View	Download	0.603	N/A	N/A	f.7.1	Lipovitellin-phosvitin complex; beta-sheet shell regions
View	Download	0.560	N/A	N/A	d.109.1	Actin depolymerizing proteins

Predicted Domain #3

Region A:
Residues: [279-371]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ISAETREQFL KRTIKNLLSS PELMHTLRLF IDYNQSYKQT AEQLHIHINT LHYRLKKIEE  60
   61 YTGLDPKQFK DLNILYFSLL LLDNHTKKND KID

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.22
Match:	1ntcA
Description:	DNA-binding domain of NTRC
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
transcription regulator activity	3.3433274000438	bayes_pls_golite062009
DNA binding	2.69924718143396	bayes_pls_golite062009
binding	2.59564404935518	bayes_pls_golite062009
nucleic acid binding	2.49248256652331	bayes_pls_golite062009
transcription factor activity	2.13079795809497	bayes_pls_golite062009
sequence-specific DNA binding	0.694747504121538	bayes_pls_golite062009
RNA polymerase II transcription factor activity	0.611882179195983	bayes_pls_golite062009
protein binding	0.440093783038461	bayes_pls_golite062009
transcription repressor activity	0.382260654915774	bayes_pls_golite062009
transcription activator activity	0.249743327112707	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: