YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|49480048, gi\|...
Organism:	Bacillus thuringiensis serovar konkukian str. 97-27
Length:	371 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|49480048, gi|....

Description	E-value	Query Range	Subject Range
gi\|51977508, gi\|... - gi\|52144039\|ref\|YP_082790.1\| carbohydrate diacid regulator [Bacillus cereus E33L], gi\|51977508\|gb\|AA...	5.0E-84	[1..371]	[1..371]
gi\|228944995, gi... - gi\|228944995\|ref\|ZP_04107356.1\| Transcriptional regulator [Bacillus thuringiensis serovar monterrey ... gi\|65318664 - gi\|65318664\|ref\|ZP_00391623.1\| COG3835: Sugar diacid utilization regulator [Bacillus anthracis str. ... gi\|228932677, gi... - gi\|228932677\|ref\|ZP_04095551.1\| Transcriptional regulator [Bacillus thuringiensis serovar andalousie... gi\|229120936, gi... - gi\|229120936\|ref\|ZP_04250178.1\| Transcriptional regulator [Bacillus cereus 95/8201], gi\|228662596\|gb...	9.0E-84	[1..371]	[4..374]
gi\|42736404, gi\|... - gi\|42780485\|ref\|NP_977732.1\| transcriptional regulator, putative [Bacillus cereus ATCC 10987], gi\|42...	1.0E-82	[1..371]	[1..371]
gi\|29894993, gi\|... - gi\|30019449\|ref\|NP_831080.1\| carbohydrate diacid regulator [Bacillus cereus ATCC 14579], gi\|29894993... gi\|218233562, gi... - gi\|218233562\|ref\|YP_002366080.1\| putative carbohydrate diacid regulator [Bacillus cereus B4264], gi\|...	1.0E-82	[1..371]	[1..371]
gi\|89151094, gi\|... - gi\|89200933\|ref\|ZP_01179682.1\| Helix-turn-helix, Fis-type [Bacillus cereus subsp. cytotoxis NVH 391-...	1.0E-82	[1..371]	[1..371]
gi\|47556736, gi\|... - gi\|47566183\|ref\|ZP_00237211.1\| carbohydrate diacid regulator [Bacillus cereus G9241], gi\|47556736\|gb...	4.0E-82	[1..371]	[1..371]
gi\|75760002, gi\|... - gi\|75760002\|ref\|ZP_00740069.1\| Carbohydrate diacid regulator [Bacillus thuringiensis serovar israele...	7.0E-82	[1..371]	[4..374]
gi\|89157537, gi\|... - gi\|89204476\|ref\|ZP_01183053.1\| Helix-turn-helix, Fis-type [Bacillus weihenstephanensis KBAB4], gi\|89...	1.0E-79	[1..371]	[1..371]
gi\|23100285, gi\|... - gi\|23100285\|ref\|NP_693752.1\| hypothetical protein OB2830 [Oceanobacillus iheyensis HTE831], gi\|22778...	3.0E-77	[6..364]	[6..366]
gi\|28808253 - gi\|28808253\|dbj\|BAC61458.1\| conserved hypothetical protein [Vibrio parahaemolyticus RIMD 2210633] gi\|28899970, gi\|... - gi\|28899970\|ref\|NP_799625.1\| hypothetical protein VPA0115 [Vibrio parahaemolyticus RIMD 2210633], gi...	2.0E-72	[1..359]	[3..376]

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Predicted Domain #1

Region A:
Residues: [1-136]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLFPDLANKI VREVRRLIKE NIIIINIQGV IIASTDIERI GQFHEGALRC AKQKKTVIIT  60
   61 KEDERRLHGV KAGMNLPLLF HDEVIGVIGI TGEPENISQY GEILRKMTEL LIHENYFLEQ 120
  121 LELEHRSYEA FVFDWL

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.13
Match:	2gx5A
Description:	No description for 2gx5A was found.

Predicted Domain #2

Region A:
Residues: [137-278]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QNTDWSPSFL DRAKTLGIDL YKKKQLILFS IDQNDTMLQR KIWQHVRNLL TKEHLFVRWG  60
   61 NDRFILFTAM SSKEQTYQFL KRLKQDCETL FSIPLYIGIG QSVTPSNMNL SYEQALQALS 120
  121 VSLATKKIVF NDDLRLEMCL QD

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [279-371]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ISAETREQFL KRTIKNLLSS PELMHTLRLF IDYNQSYKQT AEQLHIHINT LHYRLKKIEE  60
   61 YTGLDPKQFK DLNILYFSLL LLDNHTKKND KID

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.22
Match:	1ntcA
Description:	DNA-binding domain of NTRC
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
transcription regulator activity	3.3433274000438	bayes_pls_golite062009
DNA binding	2.69924718143396	bayes_pls_golite062009
binding	2.59564404935518	bayes_pls_golite062009
nucleic acid binding	2.49248256652331	bayes_pls_golite062009
transcription factor activity	2.13079795809497	bayes_pls_golite062009
sequence-specific DNA binding	0.694747504121538	bayes_pls_golite062009
RNA polymerase II transcription factor activity	0.611882179195983	bayes_pls_golite062009
protein binding	0.440093783038461	bayes_pls_golite062009
transcription repressor activity	0.382260654915774	bayes_pls_golite062009
transcription activator activity	0.249743327112707	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: