YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30263132, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	101 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30263132, gi|....

Description	E-value	Query Range	Subject Range
Y1325_METJA, YD2... - (Q58721) Putative HTH-type transcriptional regulator MJ1325, Uncharacterized HTH-type transcriptiona... Y1325_METJA - Uncharacterized HTH-type transcriptional regulator MJ1325 OS=Methanocaldococcus jannaschii (strain A... gi\|255051040, gi... - gi\|255051040\|ref\|ZP_05303303.1\| transcriptional regulator, ArsR family [Methanocaldococcus vulcanius...	1.0E-22	[3..90]	[2..89]
gi\|89209648, gi\|... - gi\|89209648\|ref\|ZP_01188043.1\| regulatory protein, ArsR [Halothermothrix orenii H 168], gi\|89160717\|...	1.0E-21	[2..94]	[41..132]
gi\|87310714, gi\|... - gi\|87310714\|ref\|ZP_01092841.1\| ArsR family transcriptional regulator [Blastopirellula marina DSM 364...	2.0E-21	[2..90]	[51..139]
gi\|72161958, gi\|... - gi\|72161958\|ref\|YP_289615.1\| ArsR family transcriptional regulator [Thermobifida fusca YX], gi\|71915...	5.0E-21	[2..90]	[27..117]
gi\|89336824, gi\|... - gi\|89897376\|ref\|YP_520863.1\| hypothetical protein DSY4630 [Desulfitobacterium hafniense Y51], gi\|893...	1.0E-20	[3..93]	[35..124]
gi\|242229937, gi... - gi\|242258539\|ref\|ZP_04803326.1\| transcriptional regulator, ArsR family [Thermoanaerobacter sp. X513]... gi\|166854047, gi... - gi\|167039807\|ref\|YP_001662792.1\| regulatory protein, ArsR [Thermoanaerobacter sp. X514], gi\|16685404...	2.0E-20	[1..93]	[28..121]
gi\|20517474, gi\|... - gi\|20808823\|ref\|NP_623994.1\| transcriptional regulator [Thermoanaerobacter tengcongensis MB4], gi\|20... gi\|20808823 - gi\|20808823\|ref\|NP_623994.1\| predicted Transcriptional regulator [Thermoanaerobacter tengcongensis M...	3.0E-20	[1..93]	[28..121]
gi\|34483213 - gi\|34483213\|emb\|CAE10211.1\| PUTATIVE TRANSCRIPTIONAL REGULATOR [Wolinella succinogenes] gi\|34557496 - gi\|34557496\|ref\|NP_907311.1\| putative transcriptional regulator [Wolinella succinogenes DSM 1740]	3.0E-20	[1..96]	[25..119]
gi\|45359005, gi\|... - gi\|45359005\|ref\|NP_988562.1\| transcription regulator ArsR [Methanococcus maripaludis S2], gi\|4504788...	3.0E-20	[4..87]	[7..90]
gi\|67916590, gi\|... - gi\|67916590\|ref\|ZP_00510294.1\| regulatory protein, ArsR [Clostridium thermocellum ATCC 27405], gi\|67...	4.0E-20	[2..95]	[46..138]

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Predicted Domain #1

Region A:
Residues: [1-101]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQDFQLYEK KFKALADQKR LEIMYELCQR GQTCVCDLTE IFEMTQSKLS YHLKILLDAG  60
   61 LIVKETKGTW SYYDLNDAEV NNLLSEELCC IFRKTGKGSC C

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	18.09691
Match:	1u2wA
Description:	Crystal Structure of the Staphylococcus aureus pI258 CadC
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
transcription regulator activity	3.98990675336286	bayes_pls_golite062009
DNA binding	3.4273272886116	bayes_pls_golite062009
nucleic acid binding	3.38054693035398	bayes_pls_golite062009
transcription factor activity	2.80110428028438	bayes_pls_golite062009
binding	2.18911933843505	bayes_pls_golite062009
transcription activator activity	0.53294679084865	bayes_pls_golite062009
sequence-specific DNA binding	0.53285802828572	bayes_pls_golite062009
transcription repressor activity	0.513853050429619	bayes_pls_golite062009
protein binding	0.035220363090062	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: