YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30258885, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	366 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30258885, gi|....

Description	E-value	Query Range	Subject Range
gi\|47569682, gi\|... - gi\|47569682\|ref\|ZP_00240357.1\| leucine dehydrogenase [Bacillus cereus G9241], gi\|47553650\|gb\|EAL1202... gi\|42783283, gi\|... - gi\|42783283\|ref\|NP_980530.1\| leucine dehydrogenase [Bacillus cereus ATCC 10987], gi\|42739211\|gb\|AAS4...	2.0E-81	[1..366]	[1..366]
gi\|89151184, gi\|... - gi\|89200803\|ref\|ZP_01179553.1\| Glu/Leu/Phe/Val dehydrogenase, C terminal:Glu/Leu/Phe/Val dehydrogena...	2.0E-81	[1..366]	[1..366]
gi\|75761049, gi\|... - gi\|75761049\|ref\|ZP_00741049.1\| Leucine dehydrogenase [Bacillus thuringiensis serovar israelensis ATC... DHLE_BACCE - Leucine dehydrogenase OS=Bacillus cereus GN=ldh PE=1 SV=1 gi\|228902679, gi... - gi\|228902679\|ref\|ZP_04066827.1\| Leucine dehydrogenase [Bacillus thuringiensis IBL 4222], gi\|22885696... gi\|228849518, gi... - gi\|228910001\|ref\|ZP_04073821.1\| Leucine dehydrogenase [Bacillus thuringiensis IBL 200], gi\|228849518... gi\|228941327, gi... - gi\|228941327\|ref\|ZP_04103880.1\| Leucine dehydrogenase [Bacillus thuringiensis serovar berliner ATCC ... gi\|228799294, gi... - gi\|228960433\|ref\|ZP_04122085.1\| Leucine dehydrogenase [Bacillus thuringiensis serovar pakistani str.... gi\|218234813, gi... - gi\|218234813\|ref\|YP_002368968.1\| leucine dehydrogenase [Bacillus cereus B4264], gi\|218162770\|gb\|ACK6... gi\|228792576, gi... - gi\|228967207\|ref\|ZP_04128243.1\| Leucine dehydrogenase [Bacillus thuringiensis serovar sotto str. T04... gi\|218899329, gi... - gi\|218899329\|ref\|YP_002447740.1\| leucine dehydrogenase [Bacillus cereus G9842], gi\|218542761\|gb\|ACK9... gi\|228785599, gi... - gi\|228974259\|ref\|ZP_04134829.1\| Leucine dehydrogenase [Bacillus thuringiensis serovar thuringiensis ... gi\|228779019, gi... - gi\|228980850\|ref\|ZP_04141155.1\| Leucine dehydrogenase [Bacillus thuringiensis Bt407], gi\|228779019\|g... gi\|228723491, gi... - gi\|229047861\|ref\|ZP_04193438.1\| Leucine dehydrogenase [Bacillus cereus AH676], gi\|228723491\|gb\|EEL74... gi\|229111639, gi... - gi\|229111639\|ref\|ZP_04241190.1\| Leucine dehydrogenase [Bacillus cereus Rock1-15], gi\|228672021\|gb\|EE... gi\|229129445, gi... - gi\|229129445\|ref\|ZP_04258416.1\| Leucine dehydrogenase [Bacillus cereus BDRD-Cer4], gi\|228654050\|gb\|E... gi\|229146739, gi... - gi\|229146739\|ref\|ZP_04275105.1\| Leucine dehydrogenase [Bacillus cereus BDRD-ST24], gi\|228636759\|gb\|E... gi\|229152367, gi... - gi\|229152367\|ref\|ZP_04280559.1\| Leucine dehydrogenase [Bacillus cereus m1550], gi\|228630975\|gb\|EEK87... DHLE_BACCR - Leucine dehydrogenase OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / JCM 2152 / NBRC 15305 / NCIMB...	3.0E-81	[1..366]	[1..366]
gi\|47076782 - gi\|47076782\|dbj\|BAD18325.1\| leucine dehydrogenase [Geobacillus stearothermophilus]	3.0E-81	[3..366]	[1..364]
gi\|56380758, gi\|... - gi\|56420916\|ref\|YP_148234.1\| leucine dehydrogenase [Geobacillus kaustophilus HTA426], gi\|56380758\|db... gi\|221088864, gi... - gi\|221088864\|ref\|ZP_03558390.1\| Glu/Leu/Phe/Val dehydrogenase [Geobacillus sp. Y412MC61], gi\|2207072... gi\|47076832 - gi\|47076832\|dbj\|BAD18372.1\| leucine dehydrogenase [Geobacillus kaustophilus]	4.0E-81	[3..366]	[1..364]
gi\|51974800, gi\|... - gi\|52141331\|ref\|YP_085497.1\| leucine dehydrogenase [Bacillus cereus E33L], gi\|51974800\|gb\|AAU16350.1...	7.0E-81	[1..366]	[1..366]
gi\|228614501, gi... - gi\|229168909\|ref\|ZP_04296626.1\| Leucine dehydrogenase [Bacillus cereus AH621], gi\|228614501\|gb\|EEK71... gi\|229134979, gi... - gi\|229134979\|ref\|ZP_04263785.1\| Leucine dehydrogenase [Bacillus cereus BDRD-ST196], gi\|228648481\|gb\|... gi\|163864112, gi... - gi\|89206996\|ref\|ZP_01185545.1\| Glu/Leu/Phe/Val dehydrogenase, C terminal:Glu/Leu/Phe/Val dehydrogena... gi\|228747969, gi... - gi\|229013376\|ref\|ZP_04170516.1\| Leucine dehydrogenase [Bacillus mycoides DSM 2048], gi\|228747969\|gb\|...	7.0E-81	[1..366]	[1..366]
gi\|42543921 - gi\|42543921\|dbj\|BAD11020.1\| leucine dehydrogenase [Bacillus sphaericus]	9.0E-81	[3..366]	[1..364]
DHLE_BACSU - Leucine dehydrogenase OS=Bacillus subtilis (strain 168) GN=yqiT PE=3 SV=1 gi\|221314652 - gi\|221314652\|ref\|ZP_03596457.1\| leucine dehydrogenase [Bacillus subtilis subsp. subtilis str. NCIB 3... DHLE_BACSU - Leucine dehydrogenase OS=Bacillus subtilis GN=yqiT PE=3 SV=1 gi\|221319575 - gi\|221319575\|ref\|ZP_03600869.1\| leucine dehydrogenase [Bacillus subtilis subsp. subtilis str. JH642] gi\|221323851 - gi\|221323851\|ref\|ZP_03605145.1\| leucine dehydrogenase [Bacillus subtilis subsp. subtilis str. SMY]	4.0E-80	[3..366]	[1..364]

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Predicted Domain #1

Region A:
Residues: [1-366]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALEIFEYLE KYDYEQVVFC QDKESGLKAI IAIHDTTLGP ALGGTRMWTY DSEEAAIEDA  60
   61 LRLAKGMTYK NAAAGLNLGG AKTVIIGDPR KDKSEAMFRA LGRYIQGLNG RYITAEDVGT 120
  121 TVDDMDIIHE ETDFVTGISP SFGSSGNPSP VTAYGVYRGM KAAAKEAFGT DNLEGKVIAV 180
  181 QGVGNVAYHL CKHLHAEGAK LIVTDINKEA VQRAVEEFGA TAVEPNEIYG VECDIYAPCA 240
  241 LGATVNDETI PQLKAKVIAG SANNQLKEDR HGDIIHEMGI VYAPDYVINA GGVINVADEL 300
  301 YGYNRERALK RVESIYDTIA KVIEISKRDG IATYVAADRL AEERIASLKN SRSTYLRNGH 360
  361 DIISRR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	77.30103
Match:	1lehA
Description:	Leucine dehydrogenase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor	2.86055037477031	bayes_pls_golite062009
catalytic activity	2.43483529599631	bayes_pls_golite062009
oxidoreductase activity	2.40835256378153	bayes_pls_golite062009
oxidoreductase activity, acting on CH-OH group of donors	1.78381957137814	bayes_pls_golite062009
glutamate dehydrogenase (NADP+) activity	1.72773061949486	bayes_pls_golite062009
malate dehydrogenase activity	1.29890335901924	bayes_pls_golite062009
malic enzyme activity	0.82576094727244	bayes_pls_golite062009
oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	0.73772847519488	bayes_pls_golite062009
ketol-acid reductoisomerase activity	0.0479950038396302	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: