YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30256883, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	661 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30256883, gi|....

Description	E-value	Query Range	Subject Range
gi\|29895878, gi\|... - gi\|30020327\|ref\|NP_831958.1\| MecA protein [Bacillus cereus ATCC 14579], gi\|29895878\|gb\|AAP09159.1\| M...	0.0	[1..661]	[1..661]
gi\|52143215, gi\|... - gi\|52143215\|ref\|YP_083614.1\| penicillin-binding protein 3 [Bacillus cereus E33L], gi\|51976684\|gb\|AAU...	0.0	[1..661]	[1..661]
gi\|42781332, gi\|... - gi\|42781332\|ref\|NP_978579.1\| penicillin-binding protein [Bacillus cereus ATCC 10987], gi\|42737254\|gb...	0.0	[1..661]	[1..661]
gi\|7707810 - gi\|7707810\|dbj\|BAA95415.1\| penicillin binding protein 3 [Bacillus cereus]	0.0	[1..661]	[1..662]
gi\|89202948, gi\|... - gi\|89202948\|ref\|ZP_01181651.1\| Peptidoglycan glycosyltransferase [Bacillus cereus subsp. cytotoxis N...	0.0	[1..644]	[1..644]
gi\|48728977, gi\|... - gi\|77461191\|ref\|YP_350698.1\| peptidoglycan glycosyltransferase [Pseudomonas fluorescens Pf0-1], gi\|7...	0.0	[93..660]	[7..604]
gi\|70732757, gi\|... - gi\|70732757\|ref\|YP_262520.1\| penicillin-binding protein [Pseudomonas fluorescens Pf-5], gi\|68347056\|...	0.0	[93..660]	[7..604]
tr\|E4R6Z4\|E4R6Z4... - Peptidoglycan glycosyltransferase OS=Pseudomonas putida (strain BIRD-1) GN=PPUBIRD1_4590 PE=4 SV=1 gi\|148549884, gi... - gi\|82738228\|ref\|ZP_00901065.1\| penicillin-binding protein 2 [Pseudomonas putida F1], gi\|82714724\|gb\|... tr\|I7BZF2\|I7BZF2... - Peptidoglycan glycosyltransferase OS=Pseudomonas putida (strain DOT-T1E) GN=T1E_3684 PE=4 SV=1	0.0	[93..660]	[7..604]

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Predicted Domain #1

Region A:
Residues: [1-661]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRKIWGILFL CLTFMLVGCG KEEKPQEAFD TYAKAWNKQK FAEMYDQLSE KAKKDISKKE  60
   61 FTEKYEKIYS GIEVKNLKVE AGEVKEDKKD EGPIPFKVSM DTVGGKINFG HEAKMVKEKD 120
  121 GDKESWKVDW TPDFIFPGMT KDSKVRMQTT EPKRGEIYDR NGKGLATNGK ASEIGLIPEK 180
  181 LGDTAPQTKE TVAKLLNMSV EEIDQKLAAK WVKPGYLVPI GILPEGATQN TYIDLPGVST 240
  241 KPVNVRTYPL GEAAAHLTGY IGKVNAEDLK TLQKKGYQAD DPVGKAGLEQ VLEEKLRGKK 300
  301 GGRVFVEDAQ GKEIKNLAKT DAVDGENVTL TIDSAVQEKT YNEMKGEAGS SAAINPKSGE 360
  361 TLALVSSPAY DPNIIARGTS KAQREAWNND PKKPMTNRFT QLSVPGSVFK PITAAIGLET 420
  421 KTIDPKEELK IEGLKWTKDS SWGNYYVTRV KDANPIDFDK AMKYSDNIYF AQEALKIGKD 480
  481 KFMSEAKKFG FDEKLPIEYG FPASKIANDG IKNDIQMADT GYGQGQVLMT PLHLALTYAP 540
  541 IVNDGNIPSP YIIKTDKQPK VWKENVISKG NQDILKTAMT KVINDPDGTG KIAKIDGMTL 600
  601 AGKTGTAELK VSKEAEGKEL GWFAAFDLNS PDMVITMMIE DVKGRGGSNI PAEKVKHVFQ 660
  661 K

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	93.522879
Match:	1mwrA
Description:	Penicillin binding protein 2a (PBP2A), N-terminal domain; Penicillin binding protein 2a (PBP2A), middle domain; Penicillin binding protein 2a (PBP2A), C-terminal domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
drug binding	3.43867028493374	bayes_pls_golite062009
serine-type D-Ala-D-Ala carboxypeptidase activity	3.12650314537616	bayes_pls_golite062009
penicillin binding	2.89507018520983	bayes_pls_golite062009
serine-type carboxypeptidase activity	2.70174066798582	bayes_pls_golite062009
serine-type exopeptidase activity	2.69091897402517	bayes_pls_golite062009
carboxypeptidase activity	1.96547160092829	bayes_pls_golite062009
catalytic activity	1.85492008367309	bayes_pls_golite062009
exopeptidase activity	1.44522375970439	bayes_pls_golite062009
binding	1.11566650386305	bayes_pls_golite062009
peptidase activity	0.376767771035659	bayes_pls_golite062009
nucleic acid binding	0.308828795129834	bayes_pls_golite062009
peptidase activity, acting on L-amino acid peptides	0.163657050466595	bayes_pls_golite062009
protein binding	0.0666688846338231	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: