YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30265397, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	683 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30265397, gi|....

Description	E-value	Query Range	Subject Range
gi\|89156146, gi\|... - gi\|89205920\|ref\|ZP_01184485.1\| Penicillin-binding protein 1A [Bacillus weihenstephanensis KBAB4], gi...	0.0	[1..683]	[1..683]
gi\|89150509, gi\|... - gi\|89201457\|ref\|ZP_01180197.1\| Penicillin-binding protein 1A [Bacillus cereus subsp. cytotoxis NVH 3...	0.0	[1..683]	[1..683]
gi\|75758541, gi\|... - gi\|75758541\|ref\|ZP_00738661.1\| Multimodular transpeptidase-transglycosylase PBP 2D [Bacillus thuring... gi\|228903853, gi... - gi\|228903853\|ref\|ZP_04067968.1\| YwhE (Penicillin-binding protein, Glycosyl Transferase Family 51) [B...	0.0	[1..683]	[1..683]
gi\|29898966, gi\|... - gi\|30023405\|ref\|NP_835036.1\| multimodular transpeptidase-transglycosylase PBP 2D [Bacillus cereus AT...	0.0	[1..683]	[1..683]
gi\|42740481, gi\|... - gi\|42784549\|ref\|NP_981796.1\| penicillin-binding protein [Bacillus cereus ATCC 10987], gi\|42740481\|gb...	0.0	[1..683]	[1..683]
gi\|49331988, gi\|... - gi\|49480432\|ref\|YP_039365.1\| penicillin-binding protein [Bacillus thuringiensis serovar konkukian st...	0.0	[1..683]	[1..683]
gi\|51973659, gi\|... - gi\|52140190\|ref\|YP_086641.1\| penicillin-binding protein [Bacillus cereus E33L], gi\|51973659\|gb\|AAU15...	0.0	[1..683]	[1..683]
gi\|47552975, gi\|... - gi\|47570360\|ref\|ZP_00241003.1\| penicillin-binding protein 1A, putative [Bacillus cereus G9241], gi\|4...	0.0	[1..683]	[1..683]
gi\|56421941, gi\|... - gi\|56421941\|ref\|YP_149259.1\| penicillin-binding protein [Geobacillus kaustophilus HTA426], gi\|563817...	0.0	[1..683]	[1..680]
gi\|25297714 - pir\|\|D84126 penicillin-binding protein BH3812 [imported] - Bacillus halodurans (strain C-125) gi\|10176437, gi\|... - gi\|15616374\|ref\|NP_244679.1\| penicillin-binding protein [Bacillus halodurans C-125], gi\|10176437\|dbj...	0.0	[27..683]	[30..685]

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Predicted Domain #1

Region A:
Residues: [1-683]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDQTMNPKLK KYKRLFFTVM FSSVLFFVFS FFVIIIVAKI MGPPPVAVPQ TSVFYANDDT  60
   61 VIGQSNQVQK RYNVSLNEIS PYVKEATLSI EDQRFYKHHG FDMKRIAGAI VADLKAMAKV 120
  121 QGASTITQQY ARNLYLDHDK TWKRKLLEAM YTIRLEVNYN KNHILEGYLN TIYYGHGAYG 180
  181 IEAASRLYFD KTAKELTLAE ASMLAGIPKG PSVYSPFLKE DRAKGRQSLI LDEMVEQGYI 240
  241 TKKQAASAKK EPLTFASLDT KKVAEVAPYF QDAVQASLLR DVGLDEQALQ KGGLRIYTTL 300
  301 DPKLQSVAEQ AVKDHIPDTT NIQTALVSMN PKTGEVAALV GGTDYNTSQF NRATQGARQP 360
  361 GSTFKPFLYY AALERGFTPA TRLKSEYTVF TLGDGVSKYK PKNYKDYYAD DFVTMAQALA 420
  421 VSDNVYAVKT NLFLGEDILT KTAKQFGIKS ALKDVPSLAL GTSPVKPIEM VNAYSMFANG 480
  481 GKEVKPTFIR RIMDHEGNIL YDAHLESKQV LDKNKAFVME EMMTGMFNKK LSSYAAVTGQ 540
  541 SMLSKLSRTY AGKSGSTETD SWMIGFTPQI VTGVWVGYDQ PKSISNVAEQ GYAKRIWTDT 600
  601 MEKGLDGQPK KEFKRPSDVV AVDINPENGK IATKNCPISV KMYFAKGTEP TEYCMDHVDD 660
  661 KEEFEKTSEE KKKTSWWKKY LPW

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	101.0
Match:	2oluA
Description:	No description for 2oluA was found.

Predicted functions:

Term	Confidence	Notes
serine-type D-Ala-D-Ala carboxypeptidase activity	3.37745387761459	bayes_pls_golite062009
penicillin binding	3.16077730467133	bayes_pls_golite062009
serine-type carboxypeptidase activity	3.02516915958448	bayes_pls_golite062009
serine-type exopeptidase activity	2.98959517344587	bayes_pls_golite062009
carboxypeptidase activity	2.34154596924818	bayes_pls_golite062009
catalytic activity	2.2253600206851	bayes_pls_golite062009
drug binding	2.00354593744547	bayes_pls_golite062009
exopeptidase activity	1.66768404710194	bayes_pls_golite062009
hydrolase activity, acting on glycosyl bonds	1.16054683174437	bayes_pls_golite062009
hydrolase activity, hydrolyzing O-glycosyl compounds	1.07226857049823	bayes_pls_golite062009
peptidase activity	0.0621279448114327	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: