YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30259845, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	435 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30259845, gi|....

Description	E-value	Query Range	Subject Range
gi\|2342480 - gi\|2342480\|dbj\|BAA21883.1\| RNA polymerase sigma factor N [Vibrio alginolyticus] gi\|75856327, gi\|... - gi\|75856327\|ref\|ZP_00763957.1\| COG1508: DNA-directed RNA polymerase specialized sigma subunit, sigma...	0.0	[1..434]	[1..488]
RP54_PSEPK - RNA polymerase sigma-54 factor OS=Pseudomonas putida (strain KT2440) GN=rpoN PE=1 SV=1 RP54_PSEPU - RNA polymerase sigma-54 factor OS=Pseudomonas putida GN=rpoN PE=3 SV=1 gi\|148546234, gi... - gi\|82735975\|ref\|ZP_00898836.1\| Sigma-54 factor [Pseudomonas putida F1], gi\|82716962\|gb\|EAP52015.1\| S...	0.0	[1..434]	[1..496]
gi\|91189706, gi\|... - gi\|91225586\|ref\|ZP_01260660.1\| DNA-directed RNA polymerase subunit N [Vibrio alginolyticus 12G01], g...	0.0	[1..434]	[1..488]
gi\|7434786, gi\|45733 - pir\|\|T01753 transcription initiation factor sigma rpoN - Pseudomonas putida, gi\|45733\|emb\|CAA34494.1...	0.0	[1..434]	[1..496]
gi\|156527492, gi... - gi\|156975898\|ref\|YP_001446805.1\| RNA polymerase factor sigma-54 [Vibrio harveyi ATCC BAA-1116], gi\|1... gi\|8118094 - gi\|8118094\|gb\|AAF72887.1\|AF227983_2 alternative sigma factor RpoN [Vibrio harveyi]	0.0	[1..434]	[1..490]
gi\|95109296 - gi\|95109296\|emb\|CAK13993.1\| RNA polymerase sigma-54 factor [Pseudomonas entomophila L48] gi\|95109296, gi\|... - gi\|95109296\|emb\|CAK13993.1\| RNA polymerase sigma-54 factor [Pseudomonas entomophila L48], gi\|1047803...	0.0	[1..434]	[1..497]
gi\|82545560, gi\|... - gi\|82545560\|ref\|YP_409507.1\| RNA polymerase factor sigma-54 [Shigella boydii Sb227], gi\|81246971\|gb\|...	0.0	[1..434]	[1..476]
RP54_PSEAE - RNA polymerase sigma-54 factor OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / ... gi\|254238876, gi... - gi\|254238876\|ref\|ZP_04932199.1\| RNA polymerase sigma-54 factor [Pseudomonas aeruginosa C3719], gi\|19... gi\|115587715, gi... - gi\|116052494\|ref\|YP_792807.1\| RNA polymerase factor sigma-54 [Pseudomonas aeruginosa UCBPP-PA14], gi... RP54_PSEAE - RNA polymerase sigma-54 factor OS=Pseudomonas aeruginosa GN=rpoN PE=3 SV=2 gi\|194555709, gi... - gi\|254244724\|ref\|ZP_04938046.1\| RNA polymerase sigma-54 factor [Pseudomonas aeruginosa 2192], gi\|194... gi\|218893553, gi... - gi\|218893553\|ref\|YP_002442422.1\| RNA polymerase factor sigma-54 [Pseudomonas aeruginosa LESB58], gi\|...	0.0	[1..434]	[1..496]
RP54_SALTY - RNA polymerase sigma-54 factor OS=Salmonella typhimurium GN=rpoN PE=3 SV=1 gi\|56415249, gi\|... - gi\|56415249\|ref\|YP_152324.1\| RNA polymerase factor sigma-54 [Salmonella enterica subsp. enterica ser... gi\|197215084, gi... - gi\|197251381\|ref\|YP_002148245.1\| RNA polymerase sigma-54 factor [Salmonella enterica subsp. enterica... gi\|194712643, gi... - gi\|194737141\|ref\|YP_002116270.1\| RNA polymerase sigma-54 factor [Salmonella enterica subsp. enterica... gi\|194469694, gi... - gi\|194469694\|ref\|ZP_03075678.1\| RNA polymerase sigma-54 factor [Salmonella enterica subsp. enterica ... gi\|194442910, gi... - gi\|194442910\|ref\|YP_002042578.1\| RNA polymerase sigma-54 factor [Salmonella enterica subsp. enterica... gi\|199604741, gi... - gi\|200387643\|ref\|ZP_03214255.1\| RNA polymerase sigma-54 factor [Salmonella enterica subsp. enterica ... gi\|198242246, gi... - gi\|198242246\|ref\|YP_002217291.1\| RNA polymerase sigma-54 factor [Salmonella enterica subsp. enterica... gi\|197095656, gi... - gi\|197364179\|ref\|YP_002143816.1\| RNA polymerase factor sigma-54 [Salmonella enterica subsp. enterica... gi\|197264214, gi... - gi\|197264214\|ref\|ZP_03164288.1\| RNA polymerase sigma-54 factor [Salmonella enterica subsp. enterica ... lcl\|NC_016856.1_... - [gene=rpoN] [protein=RNA polymerase factor sigma-54] [protein_id=YP_005239500.1] [location=3498306..... gi\|205333902, gi... - gi\|205333902\|gb\|EDZ20666.1\| RNA polymerase sigma-54 factor [Salmonella enterica subsp. enterica sero... gi\|205327621, gi... - gi\|205327621\|gb\|EDZ14385.1\| RNA polymerase sigma-54 factor [Salmonella enterica subsp. enterica sero... gi\|205323169, gi... - gi\|205323169\|gb\|EDZ11008.1\| RNA polymerase sigma-54 factor [Salmonella enterica subsp. enterica sero... gi\|161616330, gi... - gi\|161616330\|ref\|YP_001590295.1\| RNA polymerase factor sigma-54 [Salmonella enterica subsp. enterica... gi\|205343505, gi... - gi\|205343505\|gb\|EDZ30269.1\| RNA polymerase sigma-54 factor [Salmonella enterica subsp. enterica sero... gi\|195633540, gi... - gi\|195633540\|gb\|EDX51954.1\| RNA polymerase sigma-54 factor [Salmonella enterica subsp. enterica sero... RP54_SALTY - RNA polymerase sigma-54 factor OS=Salmonella typhimurium GN=rpoN PE=3 SV=1 gi\|168262667, gi... - gi\|205348368\|gb\|EDZ34999.1\| RNA polymerase sigma-54 factor [Salmonella enterica subsp. enterica sero... gi\|168238022, gi... - gi\|197289145\|gb\|EDY28514.1\| RNA polymerase sigma-54 factor [Salmonella enterica subsp. enterica sero... RP54_SALTY - RNA polymerase sigma-54 factor OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=rp... gi\|238910114 - gi\|238910114\|ref\|ZP_04653951.1\| RNA polymerase factor sigma-54 [Salmonella enterica subsp. enterica ... gi\|213053145 - gi\|213053145\|ref\|ZP_03346023.1\| RNA polymerase factor sigma-54 [Salmonella enterica subsp. enterica ... gi\|207858568, gi... - gi\|207858568\|ref\|YP_002245219.1\| RNA polymerase factor sigma-54 [Salmonella enterica subsp. enterica... gi\|204931181, gi... - gi\|204931181\|ref\|ZP_03221975.1\| RNA polymerase sigma-54 factor [Salmonella enterica subsp. enterica ...	0.0	[1..434]	[1..476]
gi\|70728297, gi\|... - gi\|70728297\|ref\|YP_258046.1\| RNA polymerase factor sigma-54 [Pseudomonas fluorescens Pf-5], gi\|68342...	0.0	[1..434]	[1..496]

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Predicted Domain #1

Region A:
Residues: [1-268]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKASLLQEQS LRLAMTQELR QAITMLQYNV QELSEFLYEQ SLENPLIELG GFEREKKKSS  60
   61 NTSKSTSKQV ENQMEIYSVD STTIQQHLLN QIQYYKIEEE ERKVASFIIM NMDGNGYLQE 120
  121 TNEELANLLS APLHVVDRSV ELVQSLEPAG VGARNIKECL TLQLKRLQRR NGLAEEVVED 180
  181 HFAYFVKKDW RKLVQVLKCS NEELQDAVNC ITSLQPKPGL AFSSDKPLYI VPDMAVKKDG 240
  241 DRLVLQMNER NMPRIEIHSE YSALLNNS

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	38.236572
Match:	PF04963.4
Description:	No description for PF04963.4 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [269-366]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ESEVASYVSE KYQHVQWIMR SLKQRKQTLL QVMTIIMEKQ RDFFWKGPDY LKPLALKEVA  60
   61 EELSVHESTI SRATRNKYVQ TPHGLFEMKS FFSNAVST

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	10.136677
Match:	PF04552.4
Description:	No description for PF04552.4 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [367-435]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TEDEAVSTKR VKQFIQTLVE AENKKKPLSD QKISKLLEEE HEIVISRRTV AKYREQMHIP  60
   61 ASSLRKTIG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	19.69897
Match:	2ahqA
Description:	Solution Structure of the C-terminal RpoN Domain of Sigma-54 from Aquifex aeolicus
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits