YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30259595, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	584 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30259595, gi|....

Description	E-value	Query Range	Subject Range
gi\|17232105, gi\|... - gi\|17232105\|ref\|NP_488653.1\| acetolactate synthase 3 catalytic subunit [Nostoc sp. PCC 7120], gi\|171... gi\|25291313 - pir\|\|AE2382 acetohydroxy acid synthase [imported] - Nostoc sp. (strain PCC 7120)	0.0	[5..584]	[29..603]
gi\|77977565 - gi\|77977565\|ref\|ZP_00833010.1\| COG0028: Thiamine pyrophosphate-requiring enzymes [acetolactate synth...	0.0	[4..580]	[9..583]
gi\|68249831, gi\|... - gi\|68249831\|ref\|YP_248943.1\| acetolactate synthase 3 catalytic subunit [Haemophilus influenzae 86-02... gi\|144986629, gi... - gi\|145632973\|ref\|ZP_01788706.1\| acetolactate synthase III large subunit [Haemophilus influenzae 3655... gi\|53732850 - gi\|53732850\|ref\|ZP_00349598.1\| COG0028: Thiamine pyrophosphate-requiring enzymes [acetolactate synth... gi\|229845604, gi... - gi\|229845604\|ref\|ZP_04465730.1\| acetolactate synthase 3 catalytic subunit [Haemophilus influenzae 6P...	0.0	[6..583]	[1..572]
gi\|89048720, gi\|... - gi\|89075580\|ref\|ZP_01161985.1\| acetolactate synthase III large subunit [Photobacterium sp. SKA34], g...	0.0	[6..580]	[1..570]
ILVI_HAEIN - Acetolactate synthase large subunit OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 ... ILVI_HAEIN - Acetolactate synthase large subunit OS=Haemophilus influenzae GN=ilvI PE=3 SV=1 gi\|145273548, gi... - gi\|145641734\|ref\|ZP_01797310.1\| acetolactate synthase III large subunit [Haemophilus influenzae R302... gi\|145641734 - gi\|145641734\|ref\|ZP_01797310.1\| acetolactate synthase III large subunit [Haemophilus influenzae R302...	0.0	[6..583]	[1..572]
gi\|42631583 - gi\|42631583\|ref\|ZP_00157121.1\| COG0028: Thiamine pyrophosphate-requiring enzymes [acetolactate synth...	0.0	[6..583]	[1..572]
gi\|75908969, gi\|... - gi\|75908969\|ref\|YP_323265.1\| acetolactate synthase 3 catalytic subunit [Anabaena variabilis ATCC 294...	0.0	[5..584]	[29..603]
gi\|90438046, gi\|... - gi\|90580778\|ref\|ZP_01236581.1\| acetolactate synthase III large subunit [Vibrio angustum S14], gi\|904...	0.0	[6..580]	[1..570]
gi\|77962085 - gi\|77962085\|ref\|ZP_00825910.1\| COG0028: Thiamine pyrophosphate-requiring enzymes [acetolactate synth...	0.0	[4..580]	[9..583]
gi\|21226772, gi\|... - gi\|21226772\|ref\|NP_632694.1\| acetolactate synthase 3 catalytic subunit [Methanosarcina mazei Go1], g...	0.0	[1..575]	[1..558]

Back

Predicted Domain #1

Region A:
Residues: [1-584]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNNHIEALSY YLGAFVDELT LLNVCDVVIS PGSRSTPIAL LMEQHEGMNT YLHVDERSAG  60
   61 FFALGIAKAK KRPVALLCTS GTAAANYYPA VCEAFHSRVP LIVLTADRPH ELRDVGAPQA 120
  121 MNQINLYGTF VKQFTEMALP EASEAMYHYA RLTTQRMIAS ACLAPQGPVH LNFPVREPLI 180
  181 PDFSLESLWD KGRGEYTGVV QQGNAVMPSE YVDSLVGRLS HMEKGLIICG DDSHSEIAAF 240
  241 ATQLAEKTGY PILADPLSNI RSGHHDKTMV IDCYDTFLRN ELLKETWKPD VLIRFGGMPV 300
  301 SKALTQFIKK QTKAVHIVVD ESGQWRDPAL VATEVVQASD IAFCSALIEK MPVMKKNDWF 360
  361 RMWQHINEKT KETLREMETY DTAFEGRVIT DIVRVLPEGA TLFASNSMPI RDTDSFFFTS 420
  421 DKNIQVMANR GVNGIDGIIS TALGASMICD PLVLVIGDLS FYHDLNGLLA AKLHELNITI 480
  481 VVVNNDGGGI FSFLPQYEKK EHFESLFGTP IGLDYEHVVT MYGGSFSRVN GWEQFREEVQ 540
  541 KGVTTEGLHV VEICTNRDEN LTLHRTLWAK TQDVITTSLQ GESK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	139.0
Match:	1ybhA
Description:	Crystal structure of Arabidopsis thaliana Acetohydroxyacid synthase In Complex With A Sulfonylurea Herbicide Chlorimuron Ethyl
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	2.62581591393304	bayes_pls_golite062009
transferase activity, transferring aldehyde or ketonic groups	2.19966670927343	bayes_pls_golite062009
oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor	2.14637563702643	bayes_pls_golite062009
pyruvate dehydrogenase activity	2.12899981523286	bayes_pls_golite062009
pyruvate dehydrogenase (acetyl-transferring) activity	1.99251210772227	bayes_pls_golite062009
transketolase activity	1.65415226350177	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: