YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30264448, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	584 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30264448, gi|....

Description	E-value	Query Range	Subject Range
gi\|39997177, gi\|... - gi\|39997177\|ref\|NP_953128.1\| penicillin-binding protein 2 [Geobacter sulfurreducens PCA], gi\|3998406...	0.0	[4..583]	[14..604]
gi\|78193403, gi\|... - gi\|78222148\|ref\|YP_383895.1\| peptidoglycan glycosyltransferase [Geobacter metallireducens GS-15], gi...	0.0	[5..582]	[17..605]
gi\|24986566, gi\|... - gi\|26991487\|ref\|NP_746912.1\| penicillin-binding protein 2 [Pseudomonas putida KT2440], gi\|24986566\|g...	0.0	[3..584]	[17..613]
tr\|E4R6Z4\|E4R6Z4... - Peptidoglycan glycosyltransferase OS=Pseudomonas putida (strain BIRD-1) GN=PPUBIRD1_4590 PE=4 SV=1 gi\|148549884, gi... - gi\|82738228\|ref\|ZP_00901065.1\| penicillin-binding protein 2 [Pseudomonas putida F1], gi\|82714724\|gb\|... tr\|I7BZF2\|I7BZF2... - Peptidoglycan glycosyltransferase OS=Pseudomonas putida (strain DOT-T1E) GN=T1E_3684 PE=4 SV=1	0.0	[3..584]	[17..613]
gi\|48728977, gi\|... - gi\|77461191\|ref\|YP_350698.1\| peptidoglycan glycosyltransferase [Pseudomonas fluorescens Pf0-1], gi\|7...	0.0	[3..578]	[17..607]
gi\|68188778, gi\|... - gi\|91776844\|ref\|YP_546600.1\| peptidoglycan glycosyltransferase [Methylobacillus flagellatus KT], gi\|...	0.0	[3..582]	[18..619]
gi\|56477150, gi\|... - gi\|56477150\|ref\|YP_158739.1\| penicillin-binding protein 2 [Aromatoleum aromaticum EbN1], gi\|56313193...	0.0	[2..580]	[13..612]
gi\|71905755, gi\|... - gi\|71905755\|ref\|YP_283342.1\| peptidoglycan glycosyltransferase [Dechloromonas aromatica RCB], gi\|718...	0.0	[2..581]	[13..617]
gi\|222056559, gi... - gi\|222056559\|ref\|YP_002538921.1\| penicillin-binding protein 2 [Geobacter sp. FRC-32], gi\|221565848\|g...	0.0	[4..583]	[15..606]
gi\|70732757, gi\|... - gi\|70732757\|ref\|YP_262520.1\| penicillin-binding protein [Pseudomonas fluorescens Pf-5], gi\|68347056\|...	0.0	[3..581]	[17..610]

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Predicted Domain #1

Region A:
Residues: [1-584]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKIKRRITIV LICFICVMFI LLCRLIQIQI IDTESFTDRK INLIEKSVTQ RTQSITLDDG  60
   61 RGHFIDRNGQ EIGEKKYPVL IIFPFLQIKN DMLEKIAHII GMSRQEIESQ MKDKKSAFIM 120
  121 QRGNGPFRLA REQMEKVNQL NVLGIVAAEV RLRQTSVMNH LIGNVGENER EFQKRYGEVR 180
  181 KISKQTPIGI SGLQQAFDEF LLTDGEAKVL YQVDRQGEPI FGKQAKYTSP GNPFYPVTIQ 240
  241 TTLHNELQKK AEEVVEASEI KKGGLVLLDV KKNEILAMVS KPSVQVKDES LYKNTLENQM 300
  301 LTPHFPGSVF KTIVAAAALD QNENVFNRTF NCNKDLYGED HPKVMMGTLS FKESFARSCN 360
  361 RTFSELGNEL IQKDRMVLET YVAALGGADK VGWRGSVFHT THFEQMPEEK SITIWRSEGD 420
  421 KNSKKAVAQT AIGQKDVRMS PLAIANMMAT IARGGEKMEV KAVEKIMYKN GTDFYTFEDH 480
  481 TLGGKQLSYE TVKTLQQLLR SVVTTEKGTG AAFSSLPLSV AGKSGTAQTG KGTKENRWFA 540
  541 GYFPYENPRY ALVVVDVETS SNVNAVTPIF KAIVESIYRL ENEK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	78.154902
Match:	1rp5A
Description:	PBP2x from Streptococcus pneumoniae strain 5259 with reduced susceptibility to beta-lactam antibiotics
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
serine-type D-Ala-D-Ala carboxypeptidase activity	3.37745387761459	bayes_pls_golite062009
penicillin binding	3.16077730467133	bayes_pls_golite062009
serine-type carboxypeptidase activity	3.02516915958448	bayes_pls_golite062009
serine-type exopeptidase activity	2.98959517344587	bayes_pls_golite062009
carboxypeptidase activity	2.34154596924818	bayes_pls_golite062009
catalytic activity	2.2253600206851	bayes_pls_golite062009
drug binding	2.00354593744547	bayes_pls_golite062009
exopeptidase activity	1.66768404710194	bayes_pls_golite062009
peptidase activity	0.0621279448114327	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: