YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30258780, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	247 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30258780, gi|....

Description	E-value	Query Range	Subject Range
gi\|118479262, gi... - gi\|118479262\|ref\|YP_896413.1\| segregation and condensation protein A [Bacillus thuringiensis str. Al... gi\|47565940, gi\|... - gi\|47565940\|ref\|ZP_00236979.1\| uncharacterised ACR, COG1354 [Bacillus cereus G9241], gi\|47557220\|gb\|...	2.0E-68	[1..247]	[6..252]
gi\|65321452 - gi\|65321452\|ref\|ZP_00394411.1\| COG1354: Uncharacterized conserved protein [Bacillus anthracis str. A...	5.0E-68	[1..247]	[5..251]
gi\|196023361, gi... - gi\|196045921\|ref\|ZP_03113150.1\| segregation and condensation protein A [Bacillus cereus 03BB108], gi... gi\|229186304, gi... - gi\|229186304\|ref\|ZP_04313469.1\| Segregation and condensation protein A [Bacillus cereus BGSC 6E1], g... gi\|196034993, gi... - gi\|196034993\|ref\|ZP_03102400.1\| segregation and condensation protein A [Bacillus cereus W], gi\|19599... SCPA_BACHK - Segregation and condensation protein A OS=Bacillus thuringiensis subsp. konkukian GN=scpA PE=3 SV=1 SCPA_BACHK - Segregation and condensation protein A OS=Bacillus thuringiensis subsp. konkukian (strain 97-27) GN=... SCPA_BACCZ - Segregation and condensation protein A OS=Bacillus cereus (strain ZK / E33L) GN=scpA PE=3 SV=1 SCPA_BACC3 - Segregation and condensation protein A OS=Bacillus cereus (strain 03BB102) GN=scpA PE=3 SV=1 gi\|228947778, gi... - gi\|228947778\|ref\|ZP_04110065.1\| Segregation and condensation protein A [Bacillus thuringiensis serov... SCPA_BACC0 - Segregation and condensation protein A OS=Bacillus cereus (strain AH820) GN=scpA PE=3 SV=1 gi\|229123581, gi... - gi\|229123581\|ref\|ZP_04252776.1\| Segregation and condensation protein A [Bacillus cereus 95/8201], gi... gi\|228929107, gi... - gi\|228929107\|ref\|ZP_04092134.1\| Segregation and condensation protein A [Bacillus thuringiensis serov... gi\|228824306, gi... - gi\|228935378\|ref\|ZP_04098198.1\| Segregation and condensation protein A [Bacillus thuringiensis serov...	1.0E-67	[1..247]	[1..247]
SCPA_BACC1 - Segregation and condensation protein A OS=Bacillus cereus (strain ATCC 10987 / NRS 248) GN=scpA PE=3...	1.0E-67	[1..247]	[1..247]
gi\|228748036, gi... - gi\|229013269\|ref\|ZP_04170410.1\| Segregation and condensation protein A [Bacillus mycoides DSM 2048],... SCPA_BACWK - Segregation and condensation protein A OS=Bacillus weihenstephanensis (strain KBAB4) GN=scpA PE=3 SV...	3.0E-67	[1..240]	[1..240]
gi\|229180338, gi... - gi\|229180338\|ref\|ZP_04307681.1\| Segregation and condensation protein A [Bacillus cereus 172560W], gi... gi\|228591221, gi... - gi\|229192271\|ref\|ZP_04319236.1\| Segregation and condensation protein A [Bacillus cereus ATCC 10876],... gi\|229146633, gi... - gi\|229146633\|ref\|ZP_04275000.1\| Segregation and condensation protein A [Bacillus cereus BDRD-ST24], ... gi\|228631223, gi... - gi\|229152261\|ref\|ZP_04280454.1\| Segregation and condensation protein A [Bacillus cereus m1550], gi\|2... SCPA_BACCR - Segregation and condensation protein A OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / JCM 2152 / N... SCPA_BACC2 - Segregation and condensation protein A OS=Bacillus cereus (strain G9842) GN=scpA PE=3 SV=1 SCPA_BACC4 - Segregation and condensation protein A OS=Bacillus cereus (strain B4264) GN=scpA PE=3 SV=1 gi\|206733814, gi... - gi\|206971042\|ref\|ZP_03231993.1\| segregation and condensation protein A [Bacillus cereus AH1134], gi\|... gi\|228960325, gi... - gi\|228960325\|ref\|ZP_04121978.1\| Segregation and condensation protein A [Bacillus thuringiensis serov... gi\|228967092, gi... - gi\|228967092\|ref\|ZP_04128128.1\| Segregation and condensation protein A [Bacillus thuringiensis serov... gi\|228857010, gi... - gi\|228902569\|ref\|ZP_04066720.1\| Segregation and condensation protein A [Bacillus thuringiensis IBL 4... gi\|228805275, gi... - gi\|228954343\|ref\|ZP_04116369.1\| Segregation and condensation protein A [Bacillus thuringiensis serov... gi\|228671914, gi... - gi\|229111532\|ref\|ZP_04241083.1\| Segregation and condensation protein A [Bacillus cereus Rock1-15], g... gi\|228653944, gi... - gi\|229129339\|ref\|ZP_04258310.1\| Segregation and condensation protein A [Bacillus cereus BDRD-Cer4], ... gi\|228723543, gi... - gi\|229047751\|ref\|ZP_04193331.1\| Segregation and condensation protein A [Bacillus cereus AH676], gi\|2... gi\|228711499, gi... - gi\|229071563\|ref\|ZP_04204781.1\| Segregation and condensation protein A [Bacillus cereus F65185], gi\|...	3.0E-67	[1..247]	[1..247]
SCPA_BACCN - Segregation and condensation protein A OS=Bacillus cytotoxicus (strain DSM 22905 / CIP 110041 / 391-...	2.0E-66	[1..240]	[1..240]
gi\|83726664, gi\|... - gi\|83746711\|ref\|ZP_00943760.1\| Segregation and condensation protein ScpA [Ralstonia solanacearum UW5...	9.0E-63	[3..246]	[105..341]
SCPA_BACHD - Segregation and condensation protein A OS=Bacillus halodurans GN=scpA PE=3 SV=1 SCPA_BACHD - Segregation and condensation protein A OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FER...	5.0E-62	[2..244]	[3..247]
gi\|91782344, gi\|... - gi\|91782344\|ref\|YP_557550.1\| condensin subunit ScpA [Burkholderia xenovorans LB400], gi\|91686298\|gb\|...	3.0E-61	[3..247]	[58..291]

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Predicted Domain #1

Region A:
Residues: [1-167]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQYNFKVEAF EGPLDLLLHL IHRYEIDIYN IPVAEITEQY LSYVHTMKEL QLDVASEYLV  60
   61 MAATLLQIKS KMLLPKHEED VLDNGDDFID DPRQELMERL IEYKKYKQVA TELKEREQER 120
  121 AQLYTRPPID FTSLQQEEET NLPLDVTLYD MLAAFQKLMR RKKAEKP

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	16.318759
Match:	PF02616.5
Description:	No description for PF02616.5 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [168-247]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VTTRITRQEI PIEQRMTDIL KQLEIQGGRQ SFYDLFVDDE REIMVVTFLA VLELMKNQQI  60
   61 IIEQEHNFDE IFVSSYTKSA

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.43
Match:	1w1wE
Description:	Sc Smc1hd:Scc1-C complex, ATPgS
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	1.88909660213693	bayes_pls_golite062009
transcription regulator activity	0.659146952966611	bayes_pls_golite062009
nucleic acid binding	0.526614151800537	bayes_pls_golite062009
DNA binding	0.443743931209129	bayes_pls_golite062009
protein binding	0.215355480170793	bayes_pls_golite062009
sequence-specific DNA binding	0.0198908199689938	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: