YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30263935, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	234 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30263935, gi|....

Description	E-value	Query Range	Subject Range
gi\|83658686 - gi\|83658686\|gb\|ABC40469.1\| phage lysin N-acetylmuramoyl-L-alanine amidase [Bacillus anthracis phage ... gi\|83658632, gi\|... - gi\|85701396\|ref\|YP_459981.1\| phage lysin N-acetylmuramoyl-L-alanine amidase [Bacillus phage WBeta], ... gi\|89152495, gi\|... - gi\|89152495\|ref\|YP_512326.1\| N-acetylmuramoyl-L-alanine amidase [Bacillus phage Fah], gi\|76445718\|gb... gi\|77020159, gi\|... - gi\|77020159\|ref\|YP_338200.1\| N-acetylmuramoyl-L-alanine amidase [Bacillus phage Gamma], gi\|76564114\|... gi\|76564002, gi\|... - gi\|77020212\|ref\|YP_338149.1\| N-acetylmuramoyl-L-alanine amidase [Bacillus phage Cherry], gi\|76564002... gi\|81097478, gi\|... - gi\|81097478\|gb\|ABB55421.1\| N-acetylmuramoyl-L-alanine amidase [Bacteriophage gamma], gi\|22450207\|gb\|... gi\|195993714, gi... - gi\|196033280\|ref\|ZP_03100692.1\| N-acetylmuramoyl-L-alanine amidase CwlA [Bacillus cereus W], gi\|1959...	3.0E-63	[1..234]	[1..233]
gi\|206975128, gi... - gi\|206975128\|ref\|ZP_03236042.1\| N-acetylmuramoyl-L-alanine amidase CwlA [Bacillus cereus H3081.97], ... CWLA_BACSP - N-acetylmuramoyl-L-alanine amidase CwlA OS=Bacillus sp. GN=cwlA PE=3 SV=1 gi\|228644579, gi... - gi\|229138848\|ref\|ZP_04267428.1\| N-acetylmuramoyl-L-alanine amidase cwlA [Bacillus cereus BDRD-ST26],...	6.0E-52	[1..231]	[1..246]
gi\|49180420, gi\|... - gi\|49186493\|ref\|YP_029745.1\| prophage LambdaBa01, N-acetylmuramoyl-L-alanine amidase family protein ... gi\|47504202, gi\|... - gi\|47529054\|ref\|YP_020403.1\| prophage lambdaba01, n-acetylmuramoyl-l-alanine amidase family protein ... gi\|172080126, gi... - gi\|177655449\|ref\|ZP_02936924.1\| prophage LambdaBa01, N-acetylmuramoyl-L-alanine amidase, family 2 [B... gi\|30263648, gi\|... - gi\|30263648\|ref\|NP_846025.1\| prophage LambdaBa01, N-acetylmuramoyl-L-alanine amidase family protein ... gi\|254733668 - gi\|254733668\|ref\|ZP_05191384.1\| prophage LambdaBa01, N-acetylmuramoyl-L-alanine amidase, family 2 [B... gi\|164711180, gi... - gi\|165873079\|ref\|ZP_02217698.1\| prophage LambdaBa01, N-acetylmuramoyl-L-alanine amidase, family 2 [B... gi\|254682264 - gi\|254682264\|ref\|ZP_05146125.1\| prophage LambdaBa01, N-acetylmuramoyl-L-alanine amidase, family 2 [B... gi\|229267149, gi... - gi\|229602741\|ref\|YP_002867889.1\| prophage LambdaBa01, N-acetylmuramoyl-L-alanine amidase, family 2 [... gi\|227003233, gi... - gi\|227813464\|ref\|YP_002813473.1\| prophage LambdaBa01, N-acetylmuramoyl-L-alanine amidase, family 2 [... gi\|254751277 - gi\|254751277\|ref\|ZP_05203314.1\| prophage LambdaBa01, N-acetylmuramoyl-L-alanine amidase, family 2 [B...	2.0E-50	[1..229]	[1..217]
gi\|89207438, gi\|... - gi\|89207438\|ref\|ZP_01185979.1\| N-acetylmuramoyl-L-alanine amidase [Bacillus weihenstephanensis KBAB4...	8.0E-48	[1..229]	[1..218]
gi\|228956352, gi... - gi\|228956352\|ref\|ZP_04118187.1\| N-acetylmuramoyl-L-alanine amidase [Bacillus thuringiensis serovar k... gi\|117553201 - gi\|117553201\|gb\|ABK35129.1\| putative N-acetylmuramoyl-L-alanine amidase [Bacillus thuringiensis sero... gi\|27436099 - gi\|27436099\|gb\|AAO13301.1\|AF358861_1 unknown [Bacillus thuringiensis]	2.0E-42	[4..229]	[14..230]
gi\|221314843 - gi\|221314843\|ref\|ZP_03596648.1\| N-acetylmuramoyl-L-alanine amidase [Bacillus subtilis subsp. subtili... gi\|221319764 - gi\|221319764\|ref\|ZP_03601058.1\| N-acetylmuramoyl-L-alanine amidase [Bacillus subtilis subsp. subtili... gi\|221324043 - gi\|221324043\|ref\|ZP_03605337.1\| N-acetylmuramoyl-L-alanine amidase [Bacillus subtilis subsp. subtili... CWLA_BACSU - N-acetylmuramoyl-L-alanine amidase CwlA OS=Bacillus subtilis GN=cwlA PE=1 SV=1 CWLA_BACSU - N-acetylmuramoyl-L-alanine amidase CwlA OS=Bacillus subtilis (strain 168) GN=cwlA PE=1 SV=1	3.0E-40	[1..216]	[3..228]
gi\|15075210 - gi\|15075210\|emb\|CAC46767.1\| Probable N-acetylmuramoyl-L-alanine amidase [Sinorhizobium meliloti 1021... gi\|15965941 - gi\|15965941\|ref\|NP_386294.1\| putative amidase (AMPD protein) [Sinorhizobium meliloti 1021]	9.0E-39	[8..197]	[13..206]
gi\|52142261, gi\|... - gi\|52142261\|ref\|YP_084569.1\| N-acetylmuramoyl-L-alanine amidase and S-layer protein fusion [Bacillus...	1.0E-38	[8..233]	[160..379]
gi\|228934545, gi... - gi\|228934545\|ref\|ZP_04097380.1\| N-acetylmuramoyl-L-alanine amidase / S-layer protein [Bacillus thuri... gi\|49479019, gi\|... - gi\|49479019\|ref\|YP_037356.1\| N-acetylmuramoyl-L-alanine amidase and S-layer protein fusion [Bacillus...	1.0E-38	[8..233]	[160..379]
gi\|42782348, gi\|... - gi\|42782348\|ref\|NP_979595.1\| S-layer protein, putative [Bacillus cereus ATCC 10987], gi\|42738273\|gb\|...	2.0E-38	[8..233]	[160..379]

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Predicted Domain #1

Region A:
Residues: [1-163]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEIRKKLVVP SKYGTKCPYT MKPKYITVHN TYNDAPAENE VNYMITNNNE VSFHVAVDDK  60
   61 QAIQGIPWER NAWACGDGNG PGNRESISVE ICYSKSGGDR YYKAENNAVD VVRQLMSMYN 120
  121 IPIENVRTHQ SWSGKYCPHR MLAEGRWGAF IQKVKSGNVA SAT

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	38.69897
Match:	1yb0A
Description:	Structure of PlyL
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
N-acetylmuramoyl-L-alanine amidase activity	5.24309205254681	bayes_pls_golite062009
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	3.80195358174059	bayes_pls_golite062009
catalytic activity	0.998996028203371	bayes_pls_golite062009
hydrolase activity	0.83639977289922	bayes_pls_golite062009
binding	0.528043510871228	bayes_pls_golite062009
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	0.0631264776586918	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [164-234]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VTPKQNIIQT GAFSPYELPD AVGALKSLNM TGKAIINPEG LTYIVTDPTS DVQLQAFKEY  60
   61 LERKDWWYDD K

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	7.09691
Match:	1gvmA
Description:	Choline binding domain of autolysin C-LytA
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: