YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30258530, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	238 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30258530, gi|....

Description	E-value	Query Range	Subject Range
gi\|229061489, gi... - gi\|229061489\|ref\|ZP_04198833.1\| Orotidine 5'-phosphate decarboxylase [Bacillus cereus AH603], gi\|228... PYRF_BACC4 - Orotidine 5'-phosphate decarboxylase OS=Bacillus cereus (strain B4264) GN=pyrF PE=3 SV=1 PYRF_BACCR - Orotidine 5'-phosphate decarboxylase OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / JCM 2152 / NBR...	1.0E-55	[1..238]	[1..238]
PYRF_BACWK - Orotidine 5'-phosphate decarboxylase OS=Bacillus weihenstephanensis (strain KBAB4) GN=pyrF PE=3 SV=1	1.0E-55	[1..238]	[1..238]
gi\|196047422, gi... - gi\|196047422\|ref\|ZP_03114634.1\| orotidine 5'-phosphate decarboxylase [Bacillus cereus 03BB108], gi\|1... PYRF_BACC3 - Orotidine 5'-phosphate decarboxylase OS=Bacillus cereus (strain 03BB102) GN=pyrF PE=3 SV=1 PYRF_BACC1 - Orotidine 5'-phosphate decarboxylase OS=Bacillus cereus (strain ATCC 10987 / NRS 248) GN=pyrF PE=3 S...	2.0E-55	[1..238]	[1..238]
gi\|206970950, gi... - gi\|206970950\|ref\|ZP_03231901.1\| orotidine 5'-phosphate decarboxylase [Bacillus cereus AH1134], gi\|20... gi\|47569511, gi\|... - gi\|47569511\|ref\|ZP_00240191.1\| orotidine 5'-phosphate decarboxylase [Bacillus cereus G9241], gi\|4755...	2.0E-55	[1..238]	[1..238]
PYRF_BACCN - Orotidine 5'-phosphate decarboxylase OS=Bacillus cytotoxicus (strain DSM 22905 / CIP 110041 / 391-98...	2.0E-55	[1..238]	[1..238]
PYRF_BACCZ - Orotidine 5'-phosphate decarboxylase OS=Bacillus cereus (strain ZK / E33L) GN=pyrF PE=3 SV=1	2.0E-55	[1..238]	[1..238]
PYRF_BACHK - Orotidine 5'-phosphate decarboxylase OS=Bacillus thuringiensis subsp. konkukian (strain 97-27) GN=py... PYRF_BACHK - Orotidine 5'-phosphate decarboxylase OS=Bacillus thuringiensis subsp. konkukian GN=pyrF PE=3 SV=1	3.0E-55	[1..238]	[1..238]
PYRF_VIBC3 - Orotidine 5'-phosphate decarboxylase OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical O...	5.0E-55	[2..233]	[3..230]
gi\|116187749, gi... - gi\|75828740\|ref\|ZP_00758086.1\| COG0284: Orotidine-5'-phosphate decarboxylase [Vibrio cholerae MO10],... gi\|229351734, gi... - gi\|229511769\|ref\|ZP_04401248.1\| orotidine 5'-phosphate decarboxylase [Vibrio cholerae B33], gi\|22935... gi\|121630524, gi... - gi\|75816131\|ref\|ZP_00746610.1\| COG0284: Orotidine-5'-phosphate decarboxylase [Vibrio cholerae V52], ... PYRF_VIBCM - Orotidine 5'-phosphate decarboxylase OS=Vibrio cholerae serotype O1 (strain M66-2) GN=pyrF PE=3 SV=1 gi\|229507993, gi... - gi\|229507993\|ref\|ZP_04397498.1\| orotidine 5'-phosphate decarboxylase [Vibrio cholerae BX 330286], gi... gi\|229518907, gi... - gi\|229518907\|ref\|ZP_04408350.1\| orotidine 5'-phosphate decarboxylase [Vibrio cholerae RC9], gi\|22934... gi\|229607539, gi... - gi\|229607539\|ref\|YP_002878187.1\| orotidine 5'-phosphate decarboxylase [Vibrio cholerae MJ-1236], gi\|... PYRF_VIBCH - Orotidine 5'-phosphate decarboxylase OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inab... PYRF_VIBCH - Orotidine 5'-phosphate decarboxylase OS=Vibrio cholerae GN=pyrF PE=1 SV=1 gi\|121546724, gi... - gi\|121591429\|ref\|ZP_01678708.1\| orotidine 5`-phosphate decarboxylase [Vibrio cholerae 2740-80], gi\|1... gi\|153225057, gi... - gi\|153225057\|ref\|ZP_01954684.1\| orotidine 5`-phosphate decarboxylase [Vibrio cholerae MAK 757], gi\|1... gi\|153819859, gi... - gi\|153819859\|ref\|ZP_01972526.1\| orotidine 5`-phosphate decarboxylase [Vibrio cholerae NCTC 8457], gi...	6.0E-55	[2..233]	[3..230]
PYRF_PASMU - Orotidine 5'-phosphate decarboxylase OS=Pasteurella multocida GN=pyrF PE=3 SV=1 PYRF_PASMU - Orotidine 5'-phosphate decarboxylase OS=Pasteurella multocida (strain Pm70) GN=pyrF PE=3 SV=1	9.0E-55	[1..233]	[1..229]

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Predicted Domain #1

Region A:
Residues: [1-238]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQSLIVALD FPGKQDVEQF LRHFEGEELF VKVGMELFYK EGPAIITYLK EKGHKIFLDL  60
   61 KLHDIPNTVK SAMRSLASLD VDMVNVHAGG GSSMMKAAIE GLEEGKQEGK ERPICIAVTQ 120
  121 LTSTSETMMK KEIGIEKTLE EAVAHYAKLT KESGLDGVVC STLEVPKLRE VCGSEFVTVT 180
  181 PGIRLASDDV NDQVRVATPK RARELGSSYI VVGRSITKAE NPLEAYKTVK QQWEGVTV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	52.522879
Match:	1dbtA
Description:	Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
orotidine-5'-phosphate decarboxylase activity	2.87717797280068	bayes_pls_golite062009
catalytic activity	2.44231061702877	bayes_pls_golite062009
ribulose-phosphate 3-epimerase activity	0.982517927791965	bayes_pls_golite062009
carboxy-lyase activity	0.83446736141993	bayes_pls_golite062009
orotate phosphoribosyltransferase activity	0.108467338662618	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: