YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30257838, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	421 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30257838, gi|....

Description	E-value	Query Range	Subject Range
gi\|44004578, gi\|... - gi\|44004578\|ref\|NP_982247.1\| ImpB/MucB/SamB family protein [Bacillus cereus ATCC 10987], gi\|42741644...	0.0	[1..421]	[1..421]
gi\|56800364, gi\|... - gi\|56899930\|ref\|YP_173304.1\| DNA-damage repair protein [Bacillus thuringiensis serovar konkukian str...	0.0	[1..421]	[1..421]
gi\|254687957 - gi\|254687957\|ref\|ZP_05151812.1\| impB/mucB/samB family protein [Bacillus anthracis str. CNEVA-9066] gi\|254726341 - gi\|254726341\|ref\|ZP_05188123.1\| impB/mucB/samB family protein [Bacillus anthracis str. A1055] gi\|227002327, gi... - gi\|227811405\|ref\|YP_002808767.1\| impB/mucB/samB family protein [Bacillus anthracis str. CDC 684], gi... gi\|229264279, gi... - gi\|229599707\|ref\|YP_002860688.1\| impB/mucB/samB family protein [Bacillus anthracis str. A0248], gi\|2... gi\|254756637 - gi\|254756637\|ref\|ZP_05208666.1\| impB/mucB/samB family protein [Bacillus anthracis str. Vollum] gi\|254762654 - gi\|254762654\|ref\|ZP_05214493.1\| impB/mucB/samB family protein [Bacillus anthracis str. Australia 94] gi\|254739302 - gi\|254739302\|ref\|ZP_05197004.1\| impB/mucB/samB family protein [Bacillus anthracis str. Western North... gi\|254745139 - gi\|254745139\|ref\|ZP_05202811.1\| impB/mucB/samB family protein [Bacillus anthracis str. Kruger B] gi\|47566756, gi\|... - gi\|47566756\|ref\|YP_022426.1\| impb/mucb/samb family protein, (pxo2-69) [Bacillus anthracis str. 'Ames... gi\|20520364, gi\|... - gi\|21392977\|ref\|NP_653056.1\| ImpB/MucB/SamB family protein [Bacillus anthracis str. A2012], gi\|20520... gi\|10956459, gi\|... - gi\|6470220\|gb\|AAF13674.1\|AF188935_72 pXO2-69 [Bacillus anthracis], gi\|10956459\|ref\|NP_053224.1\| hypo... gi\|170125345, gi... - gi\|170709670\|ref\|ZP_02900069.1\| impB/mucB/samB family protein [Bacillus anthracis str. A0389], gi\|17... gi\|190559165, gi... - gi\|190569643\|ref\|ZP_03022503.1\| impB/mucB/samB family protein [Bacillus anthracis Tsiankovskii-I], g... gi\|167642354, gi... - gi\|167642354\|ref\|ZP_02400575.1\| impB/mucB/samB family protein [Bacillus anthracis str. A0193], gi\|16... gi\|170689993, gi... - gi\|170689993\|ref\|ZP_02881162.1\| impB/mucB/samB family protein [Bacillus anthracis str. A0465], gi\|17... gi\|165873630, gi... - gi\|165873630\|ref\|ZP_02218228.1\| impB/mucB/samB family protein [Bacillus anthracis str. A0488], gi\|16... gi\|167527586, gi... - gi\|167636949\|ref\|ZP_02395231.1\| impB/mucB/samB family protein [Bacillus anthracis str. A0442], gi\|16...	0.0	[1..421]	[1..421]
gi\|65320536, gi\|... - gi\|65320536\|ref\|ZP_00393495.1\| COG0389: Nucleotidyltransferase/DNA polymerase involved in DNA repair...	0.0	[1..421]	[1..421]
gi\|29377890, gi\|... - gi\|29377890\|ref\|NP_817017.1\| ImpB/MucB/SamB family protein [Enterococcus faecalis V583], gi\|29345342... gi\|227175290, gi... - gi\|227555580\|ref\|ZP_03985627.1\| possible DNA-directed DNA polymerase [Enterococcus faecalis HH22], g...	0.0	[2..420]	[3..430]
gi\|58616125, gi\|... - gi\|58616125\|ref\|YP_195759.1\| hypothetical protein pCF10_01 [Enterococcus faecalis], gi\|57489140\|gb\|A...	0.0	[2..420]	[5..432]
gi\|22777043, gi\|... - gi\|23098816\|ref\|NP_692282.1\| DNA-damage repair protein [Oceanobacillus iheyensis HTE831], gi\|2277704...	0.0	[2..421]	[1..416]

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Predicted Domain #1

Region A:
Residues: [1-421]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYDYSILPNR IILCVDLRSF YASVSCIKMG LDPLHTKLAV VGDMNRNGSI VLAATPPLKA  60
   61 MGVKKLARLY EIPRQKDILI VNPIMGTYIK CSNYITKLAL QYVPIEDFHQ YSIDEFFMDI 120
  121 TDSIHLFARN PNEFALQFKR EIYEHTRIEC TIGIAPNLLM SKVALDIEAK KNKDGVAYWT 180
  181 YEDIPTKLWS IRPLSKFWGI SHKTETKLNQ KGIHSIGDLA NYPLKYLKQS FGVIGEELHL 240
  241 HSNGIDFSRI SEKYVPVTTS IGKSQILMRD YTIEEFPIIL LEHTEEVCYR LRQQNKLAQT 300
  301 VQFSIGYSKS YSGGFSKTHT LSRPTNLTMD IYQVCLYFLN QQYTGEPIRS ITISLTKLIG 360
  361 EGEEQISLFD NIIQREKEIK LTKVMDEIRT KFGKNSILRG ISYTNNATAR YRNTLLGGHK 420
  421 A

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	60.522879
Match:	1k1qA
Description:	DinB homolog (DBH)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
DNA-directed DNA polymerase activity	6.95239971917213	bayes_pls_golite062009
DNA polymerase activity	6.95195255108352	bayes_pls_golite062009
nucleotidyltransferase activity	4.04220783770123	bayes_pls_golite062009
DNA primase activity	3.72146042552011	bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups	1.78467263837837	bayes_pls_golite062009
chromatin binding	1.71047958863735	bayes_pls_golite062009
structure-specific DNA binding	1.06010018021303	bayes_pls_golite062009
catalytic activity	1.04899053677564	bayes_pls_golite062009
nucleic acid binding	0.959511000267266	bayes_pls_golite062009
DNA binding	0.86778938742546	bayes_pls_golite062009
DNA-directed RNA polymerase activity	0.83818211151495	bayes_pls_golite062009
RNA polymerase activity	0.83818211151495	bayes_pls_golite062009
binding	0.808919229163124	bayes_pls_golite062009
transferase activity	0.784455099927681	bayes_pls_golite062009
exonuclease activity	0.778608024896469	bayes_pls_golite062009
protein binding	0.414848826944577	bayes_pls_golite062009
damaged DNA binding	0.39441061793492	bayes_pls_golite062009
3'-5' exonuclease activity	0.0700154911930899	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: