YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30257393, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	228 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30257393, gi|....

Description	E-value	Query Range	Subject Range
gi\|49479125, gi\|... - gi\|49479125\|ref\|YP_036878.1\| RNA polymerase factor sigma-70 [Bacillus thuringiensis serovar konkukia...	1.0E-38	[1..228]	[1..228]
gi\|29896468, gi\|... - gi\|30020915\|ref\|NP_832546.1\| RNA polymerase factor sigma-70 [Bacillus cereus ATCC 14579], gi\|2989646...	3.0E-38	[1..228]	[1..228]
gi\|52142720, gi\|... - gi\|52142720\|ref\|YP_084108.1\| RNA polymerase factor sigma-70 [Bacillus cereus E33L], gi\|51976189\|gb\|A...	6.0E-37	[1..228]	[1..228]
gi\|42781877, gi\|... - gi\|42781877\|ref\|NP_979124.1\| RNA polymerase factor sigma-70 [Bacillus cereus ATCC 10987], gi\|4273780...	2.0E-36	[1..228]	[1..228]
gi\|113900979, gi... - gi\|159897484\|ref\|YP_001543731.1\| ECF subfamily RNA polymerase sigma-24 factor [Herpetosiphon auranti...	3.0E-36	[21..227]	[5..217]
gi\|196253313, gi... - gi\|196253313\|ref\|ZP_03151946.1\| RNA polymerase, sigma-24 subunit, ECF subfamily [Clostridium thermoc... gi\|67849833, gi\|... - gi\|67916230\|ref\|ZP_00509948.1\| Sigma-70 region 2:Sigma-70 region 4 [Clostridium thermocellum ATCC 27...	5.0E-36	[1..169]	[1..190]
gi\|254760312 - gi\|254760312\|ref\|ZP_05212336.1\| RNA polymerase sigma factor SigJ [Bacillus anthracis str. Australia ... gi\|254751793 - gi\|254751793\|ref\|ZP_05203830.1\| RNA polymerase sigma factor SigJ [Bacillus anthracis str. Vollum] gi\|165868710, gi... - gi\|165868710\|ref\|ZP_02213370.1\| RNA polymerase sigma-70 factor, ECF subfamily [Bacillus anthracis st... gi\|254743337 - gi\|254743337\|ref\|ZP_05201022.1\| RNA polymerase sigma factor SigJ [Bacillus anthracis str. Kruger B] gi\|167532274, gi... - gi\|167631976\|ref\|ZP_02390303.1\| RNA polymerase sigma-70 factor, ECF subfamily [Bacillus anthracis st... gi\|254737478 - gi\|254737478\|ref\|ZP_05195181.1\| RNA polymerase sigma factor SigJ [Bacillus anthracis str. Western No... gi\|167641381, gi... - gi\|167641381\|ref\|ZP_02399632.1\| RNA polymerase sigma-70 factor, ECF subfamily [Bacillus anthracis st... gi\|254722437 - gi\|254722437\|ref\|ZP_05184225.1\| RNA polymerase sigma factor SigJ [Bacillus anthracis str. A1055] gi\|170686909, gi... - gi\|170686909\|ref\|ZP_02878128.1\| RNA polymerase sigma-70 factor, ECF subfamily [Bacillus anthracis st... gi\|254685031 - gi\|254685031\|ref\|ZP_05148891.1\| RNA polymerase sigma factor SigJ [Bacillus anthracis str. CNEVA-9066... gi\|170130487, gi... - gi\|170704686\|ref\|ZP_02895152.1\| RNA polymerase sigma-70 factor, ECF subfamily [Bacillus anthracis st... gi\|229266396, gi... - gi\|229601988\|ref\|YP_002866779.1\| RNA polymerase sigma-70 factor, ECF subfamily [Bacillus anthracis s... gi\|172084715, gi... - gi\|177649641\|ref\|ZP_02932643.1\| RNA polymerase sigma-70 factor, ECF subfamily [Bacillus anthracis st... gi\|227007267, gi... - gi\|227814737\|ref\|YP_002814746.1\| RNA polymerase sigma-70 factor, ECF subfamily [Bacillus anthracis s... gi\|190563712, gi... - gi\|190565685\|ref\|ZP_03018605.1\| RNA polymerase sigma-70 factor, ECF subfamily [Bacillus anthracis Ts... gi\|49179221, gi\|... - gi\|49185294\|ref\|YP_028546.1\| RNA polymerase sigma factor SigJ [Bacillus anthracis str. Sterne], gi\|4... gi\|47502893, gi\|... - gi\|47527745\|ref\|YP_019094.1\| RNA polymerase sigma factor SigJ [Bacillus anthracis str. 'Ames Ancesto... gi\|30257084, gi\|... - gi\|30262453\|ref\|NP_844830.1\| RNA polymerase sigma factor SigJ [Bacillus anthracis str. Ames], gi\|302... gi\|21400326, gi\|... - gi\|65319748\|ref\|ZP_00392707.1\| COG1595: DNA-directed RNA polymerase specialized sigma subunit, sigma...	7.0E-36	[20..222]	[4..220]

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Predicted Domain #1

Region A:
Residues: [1-228]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCTKVTHILK NHIDMNHSNI TFLIEQYGEL KRYCTFLTKN KWDGEDLAQE TVCKVLQKYS  60
   61 NKDICITLVY KIARNRWLDQ IKSKSVHEKI RDQITFEEPH EKIADLHEMV GKVLSSLNVQ 120
  121 QSAILLLKDV FQYSIADIAK VCSVSEGAVK ASLFRSRNRL KTVSEEGIEI VEFTDDMEVV 180
  181 VTSIREERPE LLTKLLPTID FTKLPSKQPV LLFNVKQPSS YSCMLCVA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	27.39794
Match:	1or7A
Description:	SigmaE factor (RpoE)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
transcription initiation factor activity	5.71806750193815	bayes_pls_golite062009
sigma factor activity	5.58029806879061	bayes_pls_golite062009
transcription regulator activity	3.67872017549582	bayes_pls_golite062009
binding	1.02634976114785	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: