YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30262645, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	388 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30262645, gi|....

Description	E-value	Query Range	Subject Range
gi\|38141541 - gi\|38141541\|emb\|CAE53430.1\| D-stereospecific endopeptidase [Bacillus cereus]	2.0E-96	[1..388]	[1..388]
gi\|38141543 - gi\|38141543\|emb\|CAE53431.1\| D-stereospecific endopeptidase [Bacillus thuringiensis]	2.0E-96	[1..388]	[1..388]
gi\|218539504, gi... - gi\|218903793\|ref\|YP_002451627.1\| putative D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH820... gi\|228661066, gi... - gi\|229122217\|ref\|ZP_04251431.1\| D-stereospecific peptide hydrolase [Bacillus cereus 95/8201], gi\|228... gi\|228933949, gi... - gi\|228933949\|ref\|ZP_04096792.1\| D-stereospecific peptide hydrolase [Bacillus thuringiensis serovar a... gi\|49477818, gi\|... - gi\|49477818\|ref\|YP_036766.1\| alkaline D-peptidase (D-stereospecific peptide hydrolase) [Bacillus thu... gi\|254722637 - gi\|254722637\|ref\|ZP_05184425.1\| putative D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis str...	7.0E-96	[1..388]	[1..388]
gi\|52143186, gi\|... - gi\|52143186\|ref\|YP_083643.1\| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein) [Bacil...	8.0E-94	[1..388]	[1..385]
gi\|89155521, gi\|... - gi\|89206521\|ref\|ZP_01185078.1\| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus weihenstephanensis...	2.0E-93	[1..388]	[1..389]

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Predicted Domain #1

Region A:
Residues: [1-388]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKTCSKITCA SLSLLIAGSS LLYITPASIV KAEPTQNVSS SLQTSNQSDR TSVKKAMRDS  60
   61 LQLGYPGILA QISKGGKNWS YAAGIADLRT KKQMKTDFRF RIGSTTKTFI ATVLLQLAGE 120
  121 NRLNLDDSIE KWLPGVIQGN GYDANQITIR QILNHTSGIA EYLKSKDYDI MDTKKLYTAE 180
  181 ELVKMGISLP PDFAPGKGWS YSNTGYVILG ILIEKVTGNS YAEEVENRIV EPLELSNTFL 240
  241 PGNSTVIPGT KHARGYERYD GESELKDVTY SYPGSSDGDM ISTADDLNKF FSYLLSGKLL 300
  301 KEQQLKQMLT TVPTGIAEIG RYGLGIYETK LPNGVSIWGH AGASPGFSTF AGGTLGGKHT 360
  361 VAINLNGHET SYSPSDPFKN ILLAEFSK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	61.045757
Match:	1sdeA
Description:	Toward Better Antibiotics: Crystal Structure Of D-Ala-D-Ala Peptidase inhibited by a novel bicyclic phosphate inhibitor
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
peptidase activity	2.83039919794123	bayes_pls_golite062009
hydrolase activity	2.49793880633218	bayes_pls_golite062009
peptidase activity, acting on L-amino acid peptides	2.44010191138805	bayes_pls_golite062009
catalytic activity	2.2253600206851	bayes_pls_golite062009
serine-type peptidase activity	2.06335522739332	bayes_pls_golite062009
serine hydrolase activity	2.05686596429459	bayes_pls_golite062009
exopeptidase activity	1.47021212834188	bayes_pls_golite062009
carboxypeptidase activity	1.27821858943772	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: