YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30256728, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	391 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30256728, gi|....

Description	E-value	Query Range	Subject Range
gi\|152975352, gi... - gi\|89202745\|ref\|ZP_01181457.1\| Alanine racemase region [Bacillus cereus subsp. cytotoxis NVH 391-98]...	2.0E-96	[1..391]	[1..391]
gi\|52143353, gi\|... - gi\|52143353\|ref\|YP_083477.1\| alanine racemase [Bacillus cereus E33L], gi\|51976822\|gb\|AAU18372.1\| ala...	4.0E-95	[1..391]	[1..391]
gi\|49332838, gi\|... - gi\|49481282\|ref\|YP_036225.1\| alanine racemase [Bacillus thuringiensis serovar konkukian str. 97-27],...	5.0E-95	[1..391]	[1..391]
gi\|47566849, gi\|... - gi\|47566849\|ref\|ZP_00237567.1\| alanine racemase [Bacillus cereus G9241], gi\|47556478\|gb\|EAL14811.1\| ...	9.0E-95	[1..391]	[1..391]
gi\|229127502, gi... - gi\|229127502\|ref\|ZP_04256494.1\| Alanine racemase [Bacillus cereus BDRD-Cer4], gi\|228655959\|gb\|EEL118... gi\|30020200, gi\|... - gi\|30020200\|ref\|NP_831831.1\| alanine racemase [Bacillus cereus ATCC 14579], gi\|29895750\|gb\|AAP09032.... gi\|228673896, gi... - gi\|229109560\|ref\|ZP_04239150.1\| Alanine racemase [Bacillus cereus Rock1-15], gi\|228673896\|gb\|EEL2915... gi\|229079274, gi... - gi\|229079274\|ref\|ZP_04211819.1\| Alanine racemase [Bacillus cereus Rock4-2], gi\|228704024\|gb\|EEL56465... gi\|228796804, gi... - gi\|228962874\|ref\|ZP_04124117.1\| Alanine racemase [Bacillus thuringiensis serovar pakistani str. T130... gi\|228638759, gi... - gi\|229144707\|ref\|ZP_04273107.1\| Alanine racemase [Bacillus cereus BDRD-ST24], gi\|228638759\|gb\|EEK951...	1.0E-94	[1..391]	[18..408]
gi\|74489425, gi\|... - gi\|75763091\|ref\|ZP_00742872.1\| Alanine racemase [Bacillus thuringiensis serovar israelensis ATCC 356... gi\|228858950, gi... - gi\|228900692\|ref\|ZP_04064911.1\| Alanine racemase [Bacillus thuringiensis IBL 4222], gi\|228858950\|gb\|...	3.0E-94	[1..391]	[18..408]
gi\|42781229, gi\|... - gi\|42781229\|ref\|NP_978476.1\| alanine racemase [Bacillus cereus ATCC 10987], gi\|42737151\|gb\|AAS41084....	3.0E-94	[1..391]	[1..391]
gi\|21399950, gi\|... - gi\|65319386\|ref\|ZP_00392345.1\| COG0787: Alanine racemase [Bacillus anthracis str. A2012], ref\|NP_655...	4.0E-94	[1..391]	[18..408]
gi\|163939906, gi... - gi\|89206807\|ref\|ZP_01185360.1\| Alanine racemase region [Bacillus weihenstephanensis KBAB4], gi\|89155... gi\|228650522, gi... - gi\|229132940\|ref\|ZP_04261783.1\| Alanine racemase [Bacillus cereus BDRD-ST196], gi\|228650522\|gb\|EEL06...	6.0E-91	[1..391]	[18..408]
ALR1_CLOAB - Alanine racemase 1 OS=Clostridium acetobutylicum GN=alr1 PE=3 SV=1 ALR1_CLOAB - Alanine racemase 1 OS=Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / ...	1.0E-89	[4..388]	[3..386]

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Predicted Domain #1

Region A:
Residues: [1-391]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLKYGRDTI VEVDLNAVKH NVKEFKKRVN DENIAMMAAV KANGYGHGAV EVAKAAIEAG  60
   61 INQLAIAFVD EAIELREAGI NVPILILGYT SVAAAEEAIQ YDVMMTVYRS EDLQGINEIA 120
  121 NRLQKKAQIQ VKIDTGMSRI GLQEEEVKPF LEELKRMEYV EVVGMFTHYS TADEIDKSYT 180
  181 NMQTSLFEKA VNTAKELGIH IPYIHSSNSA GSMEPSNTFQ NMVRVGIGIY GMYPSKEVNH 240
  241 SVVSLQPALS LKSKVAHIKH AKKNRGVSYG NTYVTTGEEW IATVPIGYAD GYNRQLSNKG 300
  301 HALINGVRVP VIGRVCMDQL MLDVSKAMPV QVGDEVVFYG KQGEENIAVE EIADMLGTIN 360
  361 YEVTCMLDRR IPRVYKENNE TTAVVNILRK N

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	76.30103
Match:	1epvA
Description:	Alanine racemase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
alanine racemase activity	2.62362449847897	bayes_pls_golite062009
amino-acid racemase activity	2.31165775898309	bayes_pls_golite062009
racemase and epimerase activity, acting on amino acids and derivatives	2.17003836264776	bayes_pls_golite062009
catalytic activity	1.23611818854966	bayes_pls_golite062009
binding	0.911032619175149	bayes_pls_golite062009
diaminopimelate decarboxylase activity	0.492894938678183	bayes_pls_golite062009
racemase and epimerase activity	0.328743179708914	bayes_pls_golite062009
lyase activity	0.320782640542698	bayes_pls_golite062009
carboxy-lyase activity	0.14065879331273	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: