YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30256608, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	285 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30256608, gi|....

Description	E-value	Query Range	Subject Range
gi\|195990521, gi... - gi\|196036868\|ref\|ZP_03104255.1\| beta-lactamase [Bacillus cereus W], gi\|195990521\|gb\|EDX54502.1\| beta... gi\|228945594, gi... - gi\|228945594\|ref\|ZP_04107944.1\| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus thuringiensis ser... gi\|228832779, gi... - gi\|228927044\|ref\|ZP_04090110.1\| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus thuringiensis ser... gi\|228844890, gi... - gi\|228914571\|ref\|ZP_04078180.1\| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus thuringiensis ser... gi\|51976936, gi\|... - gi\|52143467\|ref\|YP_083362.1\| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus E33L], gi\|51976936... gi\|225863912, gi... - gi\|225863912\|ref\|YP_002749290.1\| beta-lactamase [Bacillus cereus 03BB102], gi\|225788359\|gb\|ACO28576.... gi\|229184187, gi... - gi\|229184187\|ref\|ZP_04311396.1\| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus BGSC 6E1],... gi\|118477407, gi... - gi\|118477407\|ref\|YP_894558.1\| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis str. Al Ha... gi\|228661994, gi... - gi\|229121530\|ref\|ZP_04250757.1\| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus 95/8201], ... gi\|218903102, gi... - gi\|218903102\|ref\|YP_002450936.1\| beta-lactamase [Bacillus cereus AH820], gi\|218535102\|gb\|ACK87500.1\|... gi\|196047003, gi... - gi\|196047003\|ref\|ZP_03114222.1\| beta-lactamase [Bacillus cereus 03BB108], gi\|196022107\|gb\|EDX60795.1... gi\|196041913, gi... - gi\|196041913\|ref\|ZP_03109201.1\| beta-lactamase [Bacillus cereus NVH0597-99], gi\|196027285\|gb\|EDX6590...	5.0E-85	[1..285]	[1..317]
gi\|229132823, gi... - gi\|229132823\|ref\|ZP_04261668.1\| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus BDRD-ST196... gi\|163939795, gi... - gi\|89207872\|ref\|ZP_01186402.1\| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus weihenstephanensis...	5.0E-85	[1..282]	[1..314]
gi\|42781103, gi\|... - gi\|42781103\|ref\|NP_978350.1\| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus ATC... gi\|217959457, gi... - gi\|217959457\|ref\|YP_002338009.1\| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus... gi\|229138682, gi... - gi\|229138682\|ref\|ZP_04267264.1\| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus BDRD-ST26]...	6.0E-85	[1..285]	[1..317]
gi\|49481177, gi\|... - gi\|49481177\|ref\|YP_036116.1\| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar kon...	1.0E-84	[1..285]	[1..317]
gi\|47568352, gi\|... - gi\|47568352\|ref\|ZP_00239054.1\| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus G9241], gi\|47555...	3.0E-84	[1..285]	[1..317]
gi\|89148540, gi\|... - gi\|89203456\|ref\|ZP_01182118.1\| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus subsp. cyto...	5.0E-76	[1..285]	[1..326]
gi\|91796763, gi\|... - gi\|92113673\|ref\|YP_573601.1\| Serine-type D-Ala-D-Ala carboxypeptidase [Chromohalobacter salexigens D...	4.0E-74	[58..284]	[3..249]
gi\|148549880, gi... - gi\|82738224\|ref\|ZP_00901061.1\| D-alanyl-D-alanine carboxypeptidase [Pseudomonas putida F1], gi\|82714...	3.0E-73	[31..284]	[20..293]
gi\|24986562, gi\|... - gi\|26991483\|ref\|NP_746908.1\| Serine-type D-Ala-D-Ala carboxypeptidase [Pseudomonas putida KT2440], g...	2.0E-72	[31..284]	[3..276]
gi\|104783763, gi... - gi\|95112750\|emb\|CAK17478.1\| D-ala-D-ala-carboxypeptidase; penicillin-binding protein 5 (precursor) [... gi\|95112750 - gi\|95112750\|emb\|CAK17478.1\| D-ala-D-ala-carboxypeptidase; penicillin-binding protein 5 (precursor) [...	2.0E-72	[37..284]	[12..276]

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Predicted Domain #1

Region A:
Residues: [1-285]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRLKWGRIT ILLVIILGIC WFLFQGTQKS VTNVEGQPLQ VAELPKTGLT EKVVPPKYIP  60
   61 PEVDAKAAMI IDASNGDIIY QHNENEAFAP AAQTEGARIP VQVNDTLTVK DLFHALMIES 120
  121 ANNSAVALAE HMAKTEKDFV QLMNAKAKQL KMSDYAKFAN ASGLQEPDGS ETKMTAADVA 180
  181 NLAYHLIKDY PEILEVTHLR QSQLAFNNIN VISTNDMLNK NNKALYIEGI DGLKTGFTDS 240
  241 AGYCFTGTAK QGDTRIITVV MGTKGKTKRF TETNKLMTYA FGLVN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	69.0
Match:	1nzoA
Description:	The crystal structure of wild type penicillin-binding protein 5 from E. coli
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
serine-type D-Ala-D-Ala carboxypeptidase activity	3.37745387761459	bayes_pls_golite062009
penicillin binding	3.16077730467133	bayes_pls_golite062009
serine-type carboxypeptidase activity	3.02516915958448	bayes_pls_golite062009
serine-type exopeptidase activity	2.98959517344587	bayes_pls_golite062009
carboxypeptidase activity	2.34154596924818	bayes_pls_golite062009
catalytic activity	2.2253600206851	bayes_pls_golite062009
drug binding	2.00354593744547	bayes_pls_golite062009
exopeptidase activity	1.66768404710194	bayes_pls_golite062009
peptidase activity	0.0621279448114327	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: