YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30255405, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	673 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30255405, gi|....

Description	E-value	Query Range	Subject Range
gi\|228656809, gi... - gi\|229126869\|ref\|ZP_04255881.1\| Multimodular transpeptidase-transglycosylase PBP 2A [Bacillus cereus... gi\|228726052, gi... - gi\|229043295\|ref\|ZP_04191016.1\| Multimodular transpeptidase-transglycosylase PBP 2A [Bacillus cereus... gi\|29895148, gi\|... - gi\|30019604\|ref\|NP_831235.1\| multimodular transpeptidase-transglycosylase PBP 2A [Bacillus cereus AT...	0.0	[1..673]	[1..680]
gi\|49332619, gi\|... - gi\|49481063\|ref\|YP_035671.1\| penicillin-binding protein 2A [Bacillus thuringiensis serovar konkukian...	0.0	[1..673]	[1..680]
gi\|51977362, gi\|... - gi\|52143893\|ref\|YP_082935.1\| penicillin-binding protein 2A [Bacillus cereus E33L], gi\|51977362\|gb\|AA...	0.0	[1..673]	[1..680]
gi\|42780652, gi\|... - gi\|42780652\|ref\|NP_977899.1\| penicillin-binding protein [Bacillus cereus ATCC 10987], gi\|42736572\|gb...	0.0	[1..673]	[1..680]
gi\|47554194, gi\|... - gi\|47569123\|ref\|ZP_00239811.1\| penicillin-binding protein 2A [Bacillus cereus G9241], gi\|47554194\|gb...	0.0	[1..673]	[1..680]
gi\|77995020, gi\|... - gi\|78042905\|ref\|YP_360392.1\| 1A family penicillin-binding protein [Carboxydothermus hydrogenoformans...	0.0	[13..659]	[2..652]
gi\|83590546, gi\|... - gi\|83590546\|ref\|YP_430555.1\| penicillin-binding protein 1A [Moorella thermoacetica ATCC 39073], gi\|8...	0.0	[6..663]	[4..681]
gi\|89097758, gi\|... - gi\|89097758\|ref\|ZP_01170646.1\| penicillin-binding protein, peptidoglycan glycosyltransferase [Bacill...	0.0	[23..667]	[4..647]
gi\|25297728 - pir\|\|AD2471 penicillin-binding protein [imported] - Nostoc sp. (strain PCC 7120) gi\|17134463, gi\|... - gi\|17232816\|ref\|NP_489364.1\| penicillin-binding protein [Nostoc sp. PCC 7120], gi\|17134463\|dbj\|BAB77...	0.0	[3..648]	[10..643]
gi\|98662587 - gi\|98662587\|dbj\|GAA00541.1\| unnamed protein product [Pelotomaculum thermopropionicum SI]	0.0	[2..660]	[36..694]

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Predicted Domain #1

Region A:
Residues: [1-673]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLKNTHLKK MQEWFNKRKK LRNLLIILGS LLATLFIAIN IIISIQDISE LKQAVPQPTL  60
   61 IYDANNEVAT KLASSKTEGV KRKDIPDIMV QAIVAVEDKE FFNHHGIYYS GIISAIFKNI 120
  121 TAGEVVAGGS TITQQLAKNV FLTQDRTYSR KIKEYFLTKK IERTYTKDEI IEMYMNQIYF 180
  181 GEGAWGIKRA AKSYFDKDVK DLTISEAATI AGLIKAPSAY SPYKNFNKSI ERRNVVLSLM 240
  241 KEQGYISDEQ YNKEKESGLV LKRGVDDKYK GKYSQYVDYI VREAMDKYEL TQNEILAGGY 300
  301 RIYTELDPKK QQAVEDVVNN DSYFKDSGSD QLMQTGVVLM NPTTGGVPAL VGGRGPYQFL 360
  361 QFNHATQLKR QPGSTLKPLA VYVPALEQGY EVYDILKDEP FNIKEYKPQN SDHTFHGDVT 420
  421 MYEAVAKSYN VSAVWLLEQI GLDKGLKSLE RFGIPLVPED RTYPIALGGM HVGTSPFVMA 480
  481 QAYSTFANDG VQVEAHAIRE IQNAEGETIG KWYKKETRVT SEKISQKMTY LLKGVVEKGT 540
  541 GEKAKVTNVD TAGKTGTTQI VNGPSTGAKD SWFVGYTPDL VGAIWVGYDK TDSDHYVPGG 600
  601 SQITTTMFRD IMKKANANPA QKAFQLSLIS EADYKKQLTT IEEEKRRKEE EQQRKQEQQE 660
  661 WLDKVKEWIP SFW

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	92.0
Match:	2oluA
Description:	No description for 2oluA was found.

Predicted functions:

Term	Confidence	Notes
serine-type D-Ala-D-Ala carboxypeptidase activity	3.37745387761459	bayes_pls_golite062009
penicillin binding	3.16077730467133	bayes_pls_golite062009
serine-type carboxypeptidase activity	3.02516915958448	bayes_pls_golite062009
serine-type exopeptidase activity	2.98959517344587	bayes_pls_golite062009
carboxypeptidase activity	2.34154596924818	bayes_pls_golite062009
catalytic activity	2.2253600206851	bayes_pls_golite062009
drug binding	2.00354593744547	bayes_pls_golite062009
exopeptidase activity	1.66768404710194	bayes_pls_golite062009
hydrolase activity, acting on glycosyl bonds	1.16054683174437	bayes_pls_golite062009
hydrolase activity, hydrolyzing O-glycosyl compounds	1.07226857049823	bayes_pls_golite062009
peptidase activity	0.0621279448114327	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: