YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30260628, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	562 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30260628, gi|....

Description	E-value	Query Range	Subject Range
gi\|49180439, gi\|... - gi\|49186512\|ref\|YP_029764.1\| prophage LambdaBa01, terminase, large subunit, putative [Bacillus anthr... gi\|47529075, gi\|... - gi\|47529075\|ref\|YP_020424.1\| prophage lambdaba01, terminase, large subunit, putative [Bacillus anthr... gi\|254751297 - gi\|254751297\|ref\|ZP_05203334.1\| prophage LambdaBa01, terminase, large subunit, putative [Bacillus an... gi\|254733688 - gi\|254733688\|ref\|ZP_05191404.1\| prophage LambdaBa01, terminase, large subunit, putative [Bacillus an... gi\|254759495 - gi\|254759495\|ref\|ZP_05211520.1\| prophage LambdaBa01, terminase, large subunit, putative [Bacillus an... gi\|65320989 - gi\|65320989\|ref\|ZP_00393948.1\| COG4626: Phage terminase-like protein, large subunit [Bacillus anthra... gi\|30258301, gi\|... - gi\|30263666\|ref\|NP_846043.1\| prophage LambdaBa01, terminase, large subunit, putative [Bacillus anthr...	0.0	[1..562]	[1..562]
gi\|193064347, gi... - gi\|75257712\|ref\|ZP_00729203.1\| COG4626: Phage terminase-like protein, large subunit [Escherichia col...	0.0	[1..560]	[1..566]
gi\|218547996, gi... - gi\|218547996\|ref\|YP_002381787.1\| putative phage terminase [Escherichia fergusonii ATCC 35469], gi\|21... gi\|91073560, gi\|... - gi\|91211986\|ref\|YP_541972.1\| bacteriophage V large terminase subunit [Escherichia coli UTI89], gi\|91... gi\|218559616, gi... - gi\|218559616\|ref\|YP_002392529.1\| putative phage terminase [Escherichia coli S88], gi\|218366385\|emb\|C... gi\|115513990, gi... - gi\|117624866\|ref\|YP_853779.1\| bacteriophage V large terminase subunit [Escherichia coli APEC O1], gi... gi\|226899798, gi... - gi\|237706758\|ref\|ZP_04537239.1\| bacteriophage V large terminase subunit [Escherichia sp. 3_2_53FAA],...	0.0	[1..560]	[1..566]
gi\|74313212, gi\|... - gi\|74313212\|ref\|YP_311631.1\| hypothetical protein SSON_2779 [Shigella sonnei Ss046], gi\|73856689\|gb\|...	0.0	[1..560]	[1..566]
gi\|163863545, gi... - gi\|89208679\|ref\|ZP_01187172.1\| Phage Terminase [Bacillus weihenstephanensis KBAB4], gi\|89153379\|gb\|E...	0.0	[1..562]	[1..562]
TERL_BPSF5 - Putative terminase large subunit OS=Shigella phage SfV GN=2 PE=3 SV=1	0.0	[1..558]	[1..564]
gi\|23505447, gi\|... - gi\|23505447\|ref\|NP_700375.1\| Terminase large subunit [Salmonella phage ST64B], gi\|23379194\|gb\|AAL258... lcl\|NC_016856.1_... - [gene=STM14_2452] [protein=terminase large subunit] [protein_id=YP_005237998.1] [location=complement...	0.0	[1..560]	[1..566]
gi\|33770510, gi\|... - gi\|33770510\|ref\|NP_892047.1\| terminase large subunit [Yersinia phage PY54], gi\|33636093\|emb\|CAD91762...	0.0	[3..561]	[1..573]
gi\|46402088, gi\|... - gi\|46402088\|ref\|YP_006582.1\| putative large terminase subunit [Klebsiella phage phiKO2], gi\|40218232...	0.0	[3..555]	[1..554]

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Predicted Domain #1

Region A:
Residues: [1-446]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRVQYPLSYN PIIEYYNKIE SGEEIVGYKV KRIYKKLVDD IYDQDSIYEY NPKRANHAME  60
   61 FIENFCKHSK GKWAGKPIDL ELWQKAFIGS LFGFIHKIDG TRKYREALLI VARKNGKSTL 120
  121 SSGICLYLQI ADGEGGAEVY AVATKEKQAK IVWSEAKRMV KKSPVLSKRI KALVKELNAD 180
  181 FNDSTFQPVG SDSDTLDGLN VHGASLDEIH AWKDKNLYDV IVDGTSAREQ PLILMITTAG 240
  241 TVRESVYDMK YEEAERLLLS LDDEKEYTDP TFLPIIYELD SRKEWTDPKC WKKANPGLGT 300
  301 IKKIDNLQTK VNKAQANPLL VKNLLTKDFN VRETSSEAWL TFEQLNNKQT FDVMELKPNY 360
  361 GIGGTDLSET TDLTAAKVIF MLPNDINVYV LQMYWLPEEL LEQRSKEDKI PYDLWHEAGY 420
  421 LRTTPGNSIH PKFVTEWFLE IRDEYG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	58.30103
Match:	1gm5A
Description:	RecG, N-terminal domain; RecG "wedge" domain; RecG helicase domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	1.8576045268999	bayes_pls_golite062009
nucleoside-triphosphatase activity	0.899518010026156	bayes_pls_golite062009
pyrophosphatase activity	0.85586999556549	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides	0.834450827636679	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	0.83347444578978	bayes_pls_golite062009
protein binding	0.193768631623192	bayes_pls_golite062009
nucleotide binding	0.0601614967638421	bayes_pls_golite062009
purine nucleotide binding	0.0518926528648858	bayes_pls_golite062009
purine ribonucleotide binding	0.0231586743339878	bayes_pls_golite062009
ribonucleotide binding	0.0231035204040646	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [447-562]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IYLPWIGYDR WSAKYWVEEM QGYFGKEAMV PVAQGKQTLS MPMKLLGADL EAKRIIYNNN  60
   61 PIDKWCLSNT AIDIDKNLNI QPDKTNNQRR RIDGTAALLD AYVVLQEKKN DYLNMI

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: