YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30253907, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	545 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30253907, gi|....

Description	E-value	Query Range	Subject Range
gi\|52785361, gi\|... - gi\|52785361\|ref\|YP_091190.1\| hypothetical protein BLi01598 [Bacillus licheniformis ATCC 14580], gi\|5...	0.0	[1..543]	[1..513]
gi\|221318508 - gi\|221318508\|ref\|ZP_03599802.1\| phosphotransferase system (PTS) glucose-specific enzyme IICBA compon... PTG3C_BACSU - PTS system glucose-specific EIICBA component OS=Bacillus subtilis (strain 168) GN=ptsG PE=1 SV=2 gi\|221322782 - gi\|221322782\|ref\|ZP_03604076.1\| phosphotransferase system (PTS) glucose-specific enzyme IICBA compon... PTGA_BACSU, PTG3... - (P20166) PTS system, glucose-specific IIABC component (EIIABC-Glc) (Glucose-permease IIABC component... gi\|221313586 - gi\|221313586\|ref\|ZP_03595391.1\| phosphotransferase system (PTS) glucose-specific enzyme IICBA compon...	0.0	[1..543]	[1..514]
gi\|90431648, gi\|... - gi\|90584591\|ref\|ZP_01240304.1\| Sugar-specific permease, EIIA 1 domain:PTS system, glucose-specific I... gi\|90428871, gi\|... - gi\|90581875\|ref\|ZP_01237640.1\| Sugar-specific permease, EIIA 1 domain:PTS system, glucose-specific I...	0.0	[1..543]	[32..544]
gi\|24378407, gi\|... - gi\|24380385\|ref\|NP_722340.1\| putative PTS system, glucose-specific IIABC component [Streptococcus mu...	0.0	[6..545]	[10..554]
PTU3C_STAAN - PTS system glucoside-specific EIICBA component OS=Staphylococcus aureus (strain N315) GN=glcB PE=1 S... PTU3C_STAA1 - PTS system glucoside-specific EIICBA component OS=Staphylococcus aureus (strain Mu3 / ATCC 700698) G... gi\|25287947 - pir\|\|C90058 PTS system, glucose-specific IIABC component [imported] - Staphylococcus aureus (strain ... PTU3C_STAAM - PTS system glucoside-specific EIICBA component OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) ... gi\|255007310 - gi\|255007310\|ref\|ZP_05145911.2\| PTS system, glucose-specific II ABC component [Staphylococcus aureus...	0.0	[1..543]	[1..513]
PTU3C_STAAS - PTS system glucoside-specific EIICBA component OS=Staphylococcus aureus (strain MSSA476) GN=glcB PE=... PTU3C_STAAC - PTS system glucoside-specific EIICBA component OS=Staphylococcus aureus (strain COL) GN=glcB PE=3 SV... PTU3C_STAAW - PTS system glucoside-specific EIICBA component OS=Staphylococcus aureus (strain MW2) GN=glcB PE=3 SV... PTU3C_STAA8 - PTS system glucoside-specific EIICBA component OS=Staphylococcus aureus (strain NCTC 8325) GN=glcB P... PTU3C_STAA3 - PTS system glucoside-specific EIICBA component OS=Staphylococcus aureus (strain USA300) GN=glcB PE=3... PTU3C_STAAT - PTS system glucoside-specific EIICBA component OS=Staphylococcus aureus (strain USA300 / TCH1516) GN... gi\|87126845\|gb\|A... - phosphotransferase system, glucose-specific IIABC component [Staphylococcus aureus subsp. aureus USA... PTU3C_STAAE - PTS system glucoside-specific EIICBA component OS=Staphylococcus aureus (strain Newman) GN=glcB PE=3...	0.0	[1..543]	[1..513]
PTU3C_STAAB - PTS system glucoside-specific EIICBA component OS=Staphylococcus aureus (strain bovine RF122 / ET3-1...	0.0	[1..543]	[1..513]
PTU3C_STAAR - PTS system glucoside-specific EIICBA component OS=Staphylococcus aureus (strain MRSA252) GN=glcB PE=...	0.0	[1..543]	[1..513]
gi\|69244471, gi\|... - gi\|69244471\|ref\|ZP_00602887.1\| Sugar-specific permease, EIIA 1 domain:PTS system, IIBC component:PTS...	0.0	[1..545]	[1..547]

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Predicted Domain #1

Region A:
Residues: [1-141]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKITSFDFWQ KFGKALLVVV AVMPAVGLMI SIGKLIGMSA GDINAVHTIA RVMEDIGWAI  60
   61 ITNLHILFAV AIGGSWAKDR AGGAFAALLA FVLTNRITGA IFGVNAEMLA DSKAKVSSVL 120
  121 AGDLIVKDYF TSVLGAPALN M

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [142-393]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GVFVGIITGF LGATLYNKYY NYNKLPQALA FFNGKRFVPF VVIVWSTVTA IVLSLLWPFI  60
   61 QSGLNEFGRW IAASKDSAPV VAPFVYGTLE RLLLPFGLHH MLTIPMNYTE LGGTYTMLTG 120
  121 SKIGQVVAGQ DPLWLAWITD LNNLLANGDT KAYNDLLNNV VPARFKAGQV IGSTAALMGI 180
  181 AFAMFRNVDK EKRAKYKPMF LSAALAVFLT GVTEPIEFMF MFIAPVLYVV YAITTGLAFA 240
  241 LADLINLRVH AF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	3.69897
Match:	2ht2A
Description:	No description for 2ht2A was found.

Predicted functions:

Term	Confidence	Notes
transporter activity	1.40104538148014	bayes_pls_golite062009
transmembrane transporter activity	1.27040739514162	bayes_pls_golite062009
substrate-specific transporter activity	0.99765601803889	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	0.87653733645387	bayes_pls_golite062009
ion transmembrane transporter activity	0.67051140447735	bayes_pls_golite062009
anion transmembrane transporter activity	0.64978720715189	bayes_pls_golite062009
channel activity	0.37948130863591	bayes_pls_golite062009
passive transmembrane transporter activity	0.37948130863591	bayes_pls_golite062009
substrate-specific channel activity	0.374530204979559	bayes_pls_golite062009
ion channel activity	0.30974369003321	bayes_pls_golite062009

Predicted Domain #3

Region A:
Residues: [394-545]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GFIELITRTP MMVNAGLTRD LINFVIVSLV FFGLNFTLFN FLIKKFNLPT PGRAGNYIDN  60
   61 EDEASEGTGN VQEGSLATKV IDLLGGKENI ADVDACMTRL RVTVKDLDVV APEAQWKQNG 120
  121 ALGLIVKDKG VQAVYGPKAD VLKSDIQDML GA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	21.30103
Match:	1o2fB
Description:	Glucose permease domain IIB
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.61117010765727	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions:

Predicted functions: