YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30253749, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	389 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30253749, gi|....

Description	E-value	Query Range	Subject Range
gi\|42779353, gi\|... - gi\|42779353\|ref\|NP_976600.1\| alanine racemase [Bacillus cereus ATCC 10987], gi\|42735268\|gb\|AAS39208....	0.0	[1..389]	[1..389]
gi\|196022980, gi... - gi\|196046235\|ref\|ZP_03113462.1\| alanine racemase [Bacillus cereus 03BB108], gi\|196022980\|gb\|EDX61660... gi\|196041155, gi... - gi\|196041155\|ref\|ZP_03108451.1\| alanine racemase [Bacillus cereus NVH0597-99], gi\|196028090\|gb\|EDX66... gi\|196036026, gi... - gi\|196036026\|ref\|ZP_03103427.1\| alanine racemase [Bacillus cereus W], gi\|195991395\|gb\|EDX55362.1\| al... gi\|228600834, gi... - gi\|229182639\|ref\|ZP_04309884.1\| Alanine racemase [Bacillus cereus BGSC 6E1], gi\|228600834\|gb\|EEK5840... gi\|49330683, gi\|... - gi\|49479127\|ref\|YP_034579.1\| alanine racemase [Bacillus thuringiensis serovar konkukian str. 97-27],... gi\|228912983, gi... - gi\|228912983\|ref\|ZP_04076626.1\| Alanine racemase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC... gi\|225790248, gi... - gi\|225862294\|ref\|YP_002747672.1\| alanine racemase [Bacillus cereus 03BB102], gi\|225790248\|gb\|ACO3046... gi\|118415225, gi... - gi\|118476000\|ref\|YP_893151.1\| alanine racemase [Bacillus thuringiensis str. Al Hakam], gi\|118415225\|... gi\|229119908, gi... - gi\|229119908\|ref\|ZP_04249166.1\| Alanine racemase [Bacillus cereus 95/8201], gi\|228663546\|gb\|EEL19128... gi\|228815624, gi... - gi\|228944050\|ref\|ZP_04106433.1\| Alanine racemase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1... gi\|228827924, gi... - gi\|228931744\|ref\|ZP_04094645.1\| Alanine racemase [Bacillus thuringiensis serovar andalousiensis BGSC... gi\|218535948, gi... - gi\|218901445\|ref\|YP_002449279.1\| alanine racemase [Bacillus cereus AH820], gi\|218535948\|gb\|ACK88346.... gi\|228834160, gi... - gi\|228925498\|ref\|ZP_04088591.1\| Alanine racemase [Bacillus thuringiensis serovar pondicheriensis BGS...	0.0	[1..389]	[1..389]
gi\|51978457, gi\|... - gi\|52144988\|ref\|YP_081841.1\| alanine racemase [Bacillus cereus E33L], gi\|51978457\|gb\|AAU20007.1\| ala...	0.0	[1..389]	[1..389]
gi\|47555891, gi\|... - gi\|47567489\|ref\|ZP_00238201.1\| alanine racemase [Bacillus cereus G9241], gi\|47555891\|gb\|EAL14230.1\| ... gi\|228776242, gi... - gi\|228983498\|ref\|ZP_04143708.1\| Alanine racemase [Bacillus thuringiensis serovar tochigiensis BGSC 4... gi\|228629532, gi... - gi\|229154011\|ref\|ZP_04282140.1\| Alanine racemase [Bacillus cereus ATCC 4342], gi\|228629532\|gb\|EEK862...	0.0	[1..389]	[1..389]
gi\|30018501, gi\|... - gi\|30018501\|ref\|NP_830132.1\| alanine racemase [Bacillus cereus ATCC 14579], gi\|29894041\|gb\|AAP07333.... gi\|229107913, gi... - gi\|229107913\|ref\|ZP_04237544.1\| Alanine racemase [Bacillus cereus Rock1-15], gi\|228675536\|gb\|EEL3074... gi\|218233448, gi... - gi\|218233448\|ref\|YP_002365079.1\| alanine racemase [Bacillus cereus B4264], gi\|218161405\|gb\|ACK61397.... gi\|228727200, gi... - gi\|229041138\|ref\|ZP_04189897.1\| Alanine racemase [Bacillus cereus AH676], gi\|228727200\|gb\|EEL78398.1... gi\|228956674, gi... - gi\|228956674\|ref\|ZP_04118465.1\| Alanine racemase [Bacillus thuringiensis serovar pakistani str. T130... gi\|228634897, gi... - gi\|229148639\|ref\|ZP_04276893.1\| Alanine racemase [Bacillus cereus m1550], gi\|228634897\|gb\|EEK91472.1... gi\|229143037, gi... - gi\|229143037\|ref\|ZP_04271474.1\| Alanine racemase [Bacillus cereus BDRD-ST24], gi\|228640426\|gb\|EEK968... gi\|229125746, gi... - gi\|229125746\|ref\|ZP_04254775.1\| Alanine racemase [Bacillus cereus BDRD-Cer4], gi\|228657719\|gb\|EEL135...	0.0	[1..389]	[1..389]
gi\|228898981, gi... - gi\|228898981\|ref\|ZP_04063258.1\| Alanine racemase [Bacillus thuringiensis IBL 4222], gi\|228860655\|gb\|... gi\|75760683, gi\|... - gi\|75760683\|ref\|ZP_00740709.1\| Alanine racemase [Bacillus thuringiensis serovar israelensis ATCC 356...	0.0	[1..389]	[1..389]
gi\|228808912, gi... - gi\|228950772\|ref\|ZP_04112901.1\| Alanine racemase [Bacillus thuringiensis serovar kurstaki str. T03a0... gi\|89475552 - gi\|89475552\|gb\|ABD73308.1\| alanine racemase [Bacillus thuringiensis serovar kurstaki]	0.0	[1..389]	[1..389]
gi\|89205768, gi\|... - gi\|89205768\|ref\|ZP_01184335.1\| Alanine racemase region [Bacillus weihenstephanensis KBAB4], gi\|89156... gi\|228618255, gi... - gi\|229165223\|ref\|ZP_04293015.1\| Alanine racemase [Bacillus cereus AH621], gi\|228618255\|gb\|EEK75288.1...	0.0	[1..389]	[1..389]
ALR_BACPS - Alanine racemase OS=Bacillus psychrosaccharolyticus GN=alr PE=1 SV=1	0.0	[1..386]	[1..382]
ALR1_BACSU - Alanine racemase 1 OS=Bacillus subtilis (strain 168) GN=alr1 PE=3 SV=2 ALR1_BACSU - Alanine racemase 1 OS=Bacillus subtilis GN=alr1 PE=3 SV=2 gi\|221312609 - gi\|221312609\|ref\|ZP_03594414.1\| D-alanine racemase [Bacillus subtilis subsp. subtilis str. NCIB 3610... gi\|221317532 - gi\|221317532\|ref\|ZP_03598826.1\| D-alanine racemase [Bacillus subtilis subsp. subtilis str. JH642] gi\|221321808 - gi\|221321808\|ref\|ZP_03603102.1\| D-alanine racemase [Bacillus subtilis subsp. subtilis str. SMY]	0.0	[1..386]	[1..382]

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Predicted Domain #1

Region A:
Residues: [1-389]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEEAPFYRDT WVEVDLDAIY NNVTHIKEFI PSDVEIFAVV KGNAYGHDYV PVAKIALEAG  60
   61 ATRLAVAFLD EALVLRRAGI TAPILVLGPS PPRDINVAAE NDVALTVFQK EWVDEAIKLW 120
  121 DGSSTMKYHI NFDSGMGRIG IRERKELKGF LKSLEGAPFL ELEGVYTHFA TADEVETSYF 180
  181 DKQYNTFLEQ LSWLKEFGVD PKFVHTANSA ATLRFQGITF NAVRIGIAMY GLSPSVEIRP 240
  241 FLPFKLEPAL SLHTKVAHIK QVIKGDGISY NVTYRTKTEE WIATVAIGYA DGWLRRLQGF 300
  301 EVLVNGKRVP IVGRVTMDQF MIHLPCEVPL GTKVTLIGRQ GDEYISATEV AEYSGTINYE 360
  361 IITTISFRVP RIFIRNGKVV EVINYLNDI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	101.0
Match:	1epvA
Description:	Alanine racemase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
alanine racemase activity	2.62362449847897	bayes_pls_golite062009
amino-acid racemase activity	2.31165775898309	bayes_pls_golite062009
racemase and epimerase activity, acting on amino acids and derivatives	2.17003836264776	bayes_pls_golite062009
catalytic activity	1.23611818854966	bayes_pls_golite062009
binding	0.911032619175149	bayes_pls_golite062009
diaminopimelate decarboxylase activity	0.492894938678183	bayes_pls_golite062009
racemase and epimerase activity	0.328743179708914	bayes_pls_golite062009
lyase activity	0.320782640542698	bayes_pls_golite062009
carboxy-lyase activity	0.14065879331273	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: