YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30253671, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	243 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30253671, gi|....

Description	E-value	Query Range	Subject Range
gi\|145952363, gi... - gi\|90572724\|ref\|ZP_01229248.1\| hypothetical protein CdifQ_02003925 [Clostridium difficile QCD-32g58]...	7.0E-40	[17..226]	[16..221]
gi\|115252628, gi... - gi\|126701191\|ref\|YP_001090088.1\| GntR family transcriptional regulator [Clostridium difficile 630], ...	6.0E-39	[17..226]	[5..210]
gi\|27367455, gi\|... - gi\|27367455\|ref\|NP_762982.1\| transcriptional regulator [Vibrio vulnificus CMCP6], gi\|27359024\|gb\|AAO... gi\|37201794, gi\|... - gi\|37677249\|ref\|NP_937645.1\| transcriptional regulator [Vibrio vulnificus YJ016], gi\|37201794\|dbj\|BA...	7.0E-39	[11..237]	[9..247]
gi\|82400647, gi\|... - gi\|82501357\|ref\|ZP_00886701.1\| regulatory protein GntR, HTH [Caldicellulosiruptor saccharolyticus DS...	3.0E-38	[18..226]	[15..219]
gi\|166853499, gi... - gi\|167039259\|ref\|YP_001662244.1\| GntR family transcriptional regulator [Thermoanaerobacter sp. X514]...	8.0E-38	[17..229]	[11..219]
gi\|71038692, gi\|... - gi\|71065707\|ref\|YP_264434.1\| GntR family transcriptional regulator [Psychrobacter arcticus 273-4], g...	1.0E-37	[11..229]	[1..215]
gi\|89048199, gi\|... - gi\|89076123\|ref\|ZP_01162482.1\| putative transcriptional regulatory protein [Photobacterium sp. SKA34...	1.0E-37	[11..237]	[9..247]
gi\|76588458, gi\|... - gi\|76796188\|ref\|ZP_00778555.1\| regulatory protein GntR, HTH:GntR, C-terminal [Thermoanaerobacter eth...	3.0E-37	[17..229]	[11..219]
gi\|28810103, gi\|... - gi\|28901556\|ref\|NP_801211.1\| putative transcriptional regulatory protein [Vibrio parahaemolyticus RI... gi\|28810103 - gi\|28810103\|dbj\|BAC63044.1\| putative transcriptional regulatory protein [Vibrio parahaemolyticus RIM...	5.0E-37	[11..237]	[9..247]
gi\|90309525, gi\|... - gi\|90409369\|ref\|ZP_01217453.1\| Transcriptional regulator [Psychromonas sp. CNPT3], gi\|90309525\|gb\|EA...	6.0E-37	[15..237]	[5..239]

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Predicted Domain #1

Region A:
Residues: [1-243]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKSMEFLYP EKWLSKASTG DRVASELRMR IIAGVIESGT ILSENKIAAD FSVSRSPVRE  60
   61 ALKLLVSENI IRLERMGAVV IGLTEKEIEE IYDVRLLIET FIFERLGKMD TNDLVRELNK 120
  121 IMEMMKIAIK YHDSDEFSYQ DLLFHETIIR TIEHSYILMI WNNLKPVMES LILLSMRTRF 180
  181 KEKYEDFERI IKNHELYIKA IESKDRALMI EALHQNFDDV QGKVEDLWMS QQMLSKGVEQ 240
  241 GHE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	22.69897
Match:	2hs5A
Description:	No description for 2hs5A was found.

Predicted functions:

Term	Confidence	Notes
transcription regulator activity	2.56369131794526	bayes_pls_golite062009
nucleic acid binding	1.49794573374102	bayes_pls_golite062009
DNA binding	1.47042497151354	bayes_pls_golite062009
transcription factor activity	1.32068126067873	bayes_pls_golite062009
binding	0.905540801797993	bayes_pls_golite062009
sequence-specific DNA binding	0.53285802828572	bayes_pls_golite062009
protein binding	0.035220363090062	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: