YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30260219, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	473 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30260219, gi|....

Description	E-value	Query Range	Subject Range
gi\|49331572, gi\|... - gi\|49480016\|ref\|YP_034383.1\| lysine decarboxylase [Bacillus thuringiensis serovar konkukian str. 97-...	4.0E-79	[1..473]	[1..473]
gi\|28204313, gi\|... - gi\|28211871\|ref\|NP_782815.1\| arginine/lysine decarboxylase [Clostridium tetani E88], gi\|28204313\|gb\|...	2.0E-78	[1..471]	[4..486]
SPEA_BACSU - Arginine decarboxylase OS=Bacillus subtilis GN=speA PE=1 SV=2 SPEA_BACSU - Arginine decarboxylase OS=Bacillus subtilis (strain 168) GN=speA PE=1 SV=2 gi\|221313660 - gi\|221313660\|ref\|ZP_03595465.1\| arginine decarboxylase [Bacillus subtilis subsp. subtilis str. NCIB ... gi\|221318582 - gi\|221318582\|ref\|ZP_03599876.1\| arginine decarboxylase [Bacillus subtilis subsp. subtilis str. JH642... gi\|221322856 - gi\|221322856\|ref\|ZP_03604150.1\| arginine decarboxylase [Bacillus subtilis subsp. subtilis str. SMY]	5.0E-78	[1..472]	[1..485]
gi\|52145188, gi\|... - gi\|52145188\|ref\|YP_081642.1\| lysine decarboxylase [Bacillus cereus E33L], gi\|51978657\|gb\|AAU20207.1\|...	9.0E-78	[1..473]	[1..473]
gi\|42779108, gi\|... - gi\|42779108\|ref\|NP_976355.1\| lysine decarboxylase [Bacillus cereus ATCC 10987], gi\|42735023\|gb\|AAS38...	2.0E-77	[1..473]	[1..473]
gi\|30018301, gi\|... - gi\|30018301\|ref\|NP_829932.1\| arginine decarboxylase [Bacillus cereus ATCC 14579], gi\|29893841\|gb\|AAP... gi\|228640598, gi... - gi\|229142835\|ref\|ZP_04271278.1\| Orn/Lys/Arg decarboxylase [Bacillus cereus BDRD-ST24], gi\|228640598\|... gi\|228657864, gi... - gi\|229125547\|ref\|ZP_04254580.1\| Orn/Lys/Arg decarboxylase [Bacillus cereus BDRD-Cer4], gi\|228657864\|...	6.0E-77	[1..473]	[1..473]
gi\|89207217, gi\|... - gi\|89207217\|ref\|ZP_01185763.1\| Orn/Lys/Arg decarboxylase, major region:Orn/Lys/Arg decarboxylase, C-...	1.0E-76	[1..473]	[1..473]
gi\|47570433, gi\|... - gi\|47570433\|ref\|ZP_00241069.1\| Orn/Lys/Arg decarboxylase [Bacillus cereus G9241], gi\|47552891\|gb\|EAL...	2.0E-76	[1..473]	[1..473]
gi\|27887495, gi\|... - gi\|34762839\|ref\|ZP_00143824.1\| ORNITHINE DECARBOXYLASE; ARGINASE [Fusobacterium nucleatum subsp. vin...	3.0E-76	[1..472]	[4..489]

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Predicted Domain #1

Region A:
Residues: [1-473]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNQNRIPLYE ALIEFKERRR LSFHVPGHKN GLNFPQEVVE EFKDILSIDV TELSGLDDLH  60
   61 SPFECIDEAQ QLLADVYGVN KSYFLINGST VGNLAMILSC CGEHDIVLVQ RNCHKSIING 120
  121 LKLAGANPIF LDPWIDEAYN VPVGIHDEII KEAIEKYPNA KALILTHPNY YGMGMDLEAS 180
  181 IAYAHTHKIP VLVDEAHGAH FCLGGAFPQS ALAYGADMVV HSAHKTLPAM TMGSYLHINS 240
  241 RLVKEEKVST YLSMLQSSSP SYPIMASLDI ARFTIARIKE KGHDEIVEFL QEFKEELSTI 300
  301 PQIAILQYPL QDGLKITVQT RCRLSGYELQ SVFEKVGIYT EMADPYNVLF ILPLQVNKKY 360
  361 MKAIEMIRVA LQYYEVKDKT ESIRYTYKGE ISPLPYTYKQ LEEYETKVVP IEEAVGMVAA 420
  421 EMVIPYPPGI PLIMYGERIT SGHKEQIMYL EKAGARFQGS RKYMKVYDIE SRF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	46.522879
Match:	1ordA
Description:	Ornithine decarboxylase N-terminal "wing" domain; Ornithine decarboxylase major domain; Ornithine decarboxylase C-terminal domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	2.66922865456094	bayes_pls_golite062009
transferase activity, transferring nitrogenous groups	1.85532625717753	bayes_pls_golite062009
transaminase activity	1.83482013760414	bayes_pls_golite062009
transferase activity	0.93810038069762	bayes_pls_golite062009
glycine dehydrogenase (decarboxylating) activity	0.520614909745139	bayes_pls_golite062009
oxidoreductase activity, acting on the CH-NH2 group of donors, disulfide as acceptor	0.520614909745139	bayes_pls_golite062009
lyase activity	0.0414385380659299	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: