YRC Public Data Repository - Protein Structure Prediction

Protein:	MURI_LISMF
Organism:	Listeria monocytogenes serotype 4b str. F2365
Length:	266 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MURI_LISMF.

Description	E-value	Query Range	Subject Range
MURI_LISIN - Glutamate racemase OS=Listeria innocua serovar 6a (strain CLIP 11262) GN=murI PE=3 SV=1 MURI_LISIN - Glutamate racemase OS=Listeria innocua GN=murI PE=3 SV=1	313.0	[0..1]	[266..1]
gi\|89086316, gi\|... - gi\|89098912\|ref\|ZP_01171792.1\| glutamate racemase [Bacillus sp. NRRL B-14911], gi\|89086316\|gb\|EAR654...	303.0	[0..1]	[265..1]
gi\|163942231, gi... - gi\|89205282\|ref\|ZP_01183853.1\| Glutamate racemase [Bacillus weihenstephanensis KBAB4], gi\|89156766\|g...	303.0	[0..1]	[265..1]
gi\|30259210, gi\|... - gi\|30264552\|ref\|NP_846929.1\| glutamate racemase [Bacillus anthracis str. Ames], gi\|30259210\|gb\|AAP28... gi\|167635587, gi... - gi\|167635587\|ref\|ZP_02393899.1\| glutamate racemase [Bacillus anthracis str. A0442], gi\|167529007\|gb\|... gi\|21402526, gi\|... - gi\|65321850\|ref\|ZP_00394809.1\| COG0796: Glutamate racemase [Bacillus anthracis str. A2012], ref\|NP_6... gi\|165871456, gi... - gi\|165871456\|ref\|ZP_02216103.1\| glutamate racemase [Bacillus anthracis str. A0488], gi\|164712753\|gb\|... gi\|170667806, gi... - gi\|170688300\|ref\|ZP_02879510.1\| glutamate racemase [Bacillus anthracis str. A0465], gi\|170667806\|gb\|... gi\|167510364, gi... - gi\|167641657\|ref\|ZP_02399902.1\| glutamate racemase [Bacillus anthracis str. A0193], gi\|167510364\|gb\|... gi\|190562029, gi... - gi\|190567038\|ref\|ZP_03019954.1\| glutamate racemase [Bacillus anthracis Tsiankovskii-I], gi\|190562029... gi\|49478653, gi\|... - gi\|49478653\|ref\|YP_038536.1\| glutamate racemase [Bacillus thuringiensis serovar konkukian str. 97-27... gi\|177653155, gi... - gi\|177653155\|ref\|ZP_02935442.1\| glutamate racemase [Bacillus anthracis str. A0174], gi\|172081679\|gb\|... gi\|49187374, gi\|... - gi\|49187374\|ref\|YP_030626.1\| glutamate racemase [Bacillus anthracis str. Sterne], gi\|49181301\|gb\|AAT... gi\|196039175, gi... - gi\|196039175\|ref\|ZP_03106481.1\| glutamate racemase [Bacillus cereus NVH0597-99], gi\|196029802\|gb\|EDX... gi\|47530017, gi\|... - gi\|47530017\|ref\|YP_021366.1\| glutamate racemase [Bacillus anthracis str. 'Ames Ancestor'], gi\|475051... gi\|195992955, gi... - gi\|196034413\|ref\|ZP_03101822.1\| glutamate racemase [Bacillus cereus W], gi\|195992955\|gb\|EDX56914.1\| ... gi\|218535114, gi... - gi\|218905685\|ref\|YP_002453519.1\| glutamate racemase [Bacillus cereus AH820], gi\|218535114\|gb\|ACK8751... gi\|196044858, gi... - gi\|196044858\|ref\|ZP_03112092.1\| glutamate racemase [Bacillus cereus 03BB108], gi\|196024346\|gb\|EDX630... MURI_BACC3 - Glutamate racemase OS=Bacillus cereus (strain 03BB102) GN=murI PE=3 SV=1 gi\|227006462, gi... - gi\|227817263\|ref\|YP_002817272.1\| glutamate racemase [Bacillus anthracis str. CDC 684], gi\|227006462\|... gi\|228830109, gi... - gi\|228929530\|ref\|ZP_04092549.1\| Glutamate racemase [Bacillus thuringiensis serovar pondicheriensis B... gi\|229602085, gi... - gi\|229602085\|ref\|YP_002868766.1\| glutamate racemase [Bacillus anthracis str. A0248], gi\|229266493\|gb... gi\|254687028 - gi\|254687028\|ref\|ZP_05150886.1\| glutamate racemase [Bacillus anthracis str. CNEVA-9066] gi\|254724590 - gi\|254724590\|ref\|ZP_05186373.1\| glutamate racemase [Bacillus anthracis str. A1055] gi\|254736586 - gi\|254736586\|ref\|ZP_05194292.1\| glutamate racemase [Bacillus anthracis str. Western North America US... gi\|254741624 - gi\|254741624\|ref\|ZP_05199311.1\| glutamate racemase [Bacillus anthracis str. Kruger B] gi\|254754778 - gi\|254754778\|ref\|ZP_05206813.1\| glutamate racemase [Bacillus anthracis str. Vollum] gi\|254757610 - gi\|254757610\|ref\|ZP_05209637.1\| glutamate racemase [Bacillus anthracis str. Australia 94]	301.0	[0..1]	[266..3]
gi\|69246346, gi\|... - gi\|69246346\|ref\|ZP_00603902.1\| Glutamate racemase [Enterococcus faecium DO], gi\|68195299\|gb\|EAN09750...	300.0	[0..2]	[265..11]
gi\|229192695, gi... - gi\|229192695\|ref\|ZP_04319654.1\| Glutamate racemase [Bacillus cereus ATCC 10876], gi\|228590785\|gb\|EEK... gi\|229180762, gi... - gi\|229180762\|ref\|ZP_04308100.1\| Glutamate racemase [Bacillus cereus 172560W], gi\|228602740\|gb\|EEK602... gi\|229147053, gi... - gi\|229147053\|ref\|ZP_04275413.1\| Glutamate racemase [Bacillus cereus BDRD-ST24], gi\|228636441\|gb\|EEK9... gi\|29898133, gi\|... - gi\|30022575\|ref\|NP_834206.1\| glutamate racemase [Bacillus cereus ATCC 14579], gi\|29898133\|gb\|AAP1140... MURI_BACC4 - Glutamate racemase OS=Bacillus cereus (strain B4264) GN=murI PE=3 SV=1 MURI_BACC2 - Glutamate racemase OS=Bacillus cereus (strain G9842) GN=murI PE=3 SV=1 gi\|206735485, gi... - gi\|206969797\|ref\|ZP_03230751.1\| glutamate racemase [Bacillus cereus AH1134], gi\|206735485\|gb\|EDZ5265... gi\|228671519, gi... - gi\|229111955\|ref\|ZP_04241499.1\| Glutamate racemase [Bacillus cereus Rock1-15], gi\|228671519\|gb\|EEL26... gi\|228711160, gi... - gi\|229072001\|ref\|ZP_04205211.1\| Glutamate racemase [Bacillus cereus F65185], gi\|228711160\|gb\|EEL6312... gi\|228723187, gi... - gi\|229048200\|ref\|ZP_04193769.1\| Glutamate racemase [Bacillus cereus AH676], gi\|228723187\|gb\|EEL74563... gi\|228849377, gi... - gi\|228910317\|ref\|ZP_04074134.1\| Glutamate racemase [Bacillus thuringiensis IBL 200], gi\|228849377\|gb...	300.0	[0..1]	[266..3]
gi\|39998014, gi\|... - gi\|39998014\|ref\|NP_953965.1\| glutamate racemase [Geobacter sulfurreducens PCA], gi\|39984959\|gb\|AAR36...	300.0	[0..3]	[265..4]
gi\|152025656, gi... - gi\|89200333\|ref\|ZP_01179087.1\| Glutamate racemase [Bacillus cereus subsp. cytotoxis NVH 391-98], gi\|...	300.0	[0..1]	[265..1]
MURI_BACCZ - Glutamate racemase OS=Bacillus cereus (strain ZK / E33L) GN=murI PE=3 SV=1	299.0	[0..1]	[266..3]
gi\|75760743, gi\|... - gi\|75760743\|ref\|ZP_00740765.1\| Glutamate racemase [Bacillus thuringiensis serovar israelensis ATCC 3...	299.0	[0..1]	[266..8]

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Predicted Domain #1

Region A:
Residues: [1-266]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKQAIGFIDS GVGGLTVVRE VLKQLPHEQV YYLGDTARCP YGPRDKEEVA KFTWEMTNFL  60
   61 VDRGIKMLVI ACNTATAAAL YDIREKLDIP VIGVIQPGSR AALKATRNNK IGVLGTLGTV 120
  121 ESMAYPTALK GLNRRVEVDS LACPKFVSVV ESGEYKSAIA KKVVAESLLP LKSTKIDTVI 180
  181 LGCTHYPLLK PIIENFMGDG VAVINSGEET ASEVSALLDY HNLLDATDEE IEHRFFTTGS 240
  241 TQIFKDIAKD WLNMPDMTVE HIKLGK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	82.0
Match:	2gzmA
Description:	No description for 2gzmA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits