| Protein: | gi|46399541, gi|... |
| Organism: | Candidatus Protochlamydia amoebophila UWE25 |
| Length: | 239 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|46399541, gi|....
| Description | E-value | Query Range |
Subject Range |
|
|
156.0 | [0..85] | [239..1] |
|
Region A: Residues: [1-71] |
1 11 21 31 41 51
| | | | | |
1 MTQDLKIRDV ADLLNVSETT IRRWVSDRKI PSYSINKHHY FSRTEIENWV ISHKFDKNQS 60
61 SSPFTQSIKT T
|
| Detection Method: |  |
| Confidence: | 1.77 |
| Match: | 1j9iA |
| Description: | Terminase gpNU1 subunit domain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 3.15084451351262 | bayes_pls_golite062009 |
| DNA binding | 1.89121395172205 | bayes_pls_golite062009 |
| nucleic acid binding | 1.85709490142946 | bayes_pls_golite062009 |
| transcription factor activity | 1.63947569382682 | bayes_pls_golite062009 |
| binding | 1.25832675558318 | bayes_pls_golite062009 |
|
Region A: Residues: [72-239] |
1 11 21 31 41 51
| | | | | |
1 VAEKKPATGG SKQFSLFRAI HKGDVLYNLS GKTKEEIIRK TMKKTAKNLN VDAEVMTELL 60
61 LDRENMMPTA LNNGVAIPHT RDSLHAQHDA IVVVFLDKPL EYGALDGKPV NTLFFLFAAD 120
121 DKRHLHLLAK IAHLSSQPKA LEFFKTKPSK DKLLAFIKDW ESQISQIV
|
| Detection Method: | |
| Confidence: | 31.522879 |
| Match: | 1a6jA |
| Description: | Nitrogen regulatory bacterial protein IIa-ntr |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| protein-N(PI)-phosphohistidine-sugar phosphotransferase activity | 4.89047341597444 | bayes_pls_golite062009 |
| carbohydrate transmembrane transporter activity | 3.92377913213665 | bayes_pls_golite062009 |
| transporter activity | 2.16741930408232 | bayes_pls_golite062009 |
| transmembrane transporter activity | 2.05879816720019 | bayes_pls_golite062009 |
| active transmembrane transporter activity | 1.87457143976439 | bayes_pls_golite062009 |
| substrate-specific transporter activity | 1.82451780056478 | bayes_pls_golite062009 |
| substrate-specific transmembrane transporter activity | 1.7251575499811 | bayes_pls_golite062009 |
| transcription regulator activity | 0.789390286938302 | bayes_pls_golite062009 |
| catalytic activity | 0.547925219495929 | bayes_pls_golite062009 |
| binding | 0.396676636991646 | bayes_pls_golite062009 |
| phosphotransferase activity, alcohol group as acceptor | 0.19707628828681 | bayes_pls_golite062009 |
| ion transmembrane transporter activity | 0.12881601139602 | bayes_pls_golite062009 |
| anion transmembrane transporter activity | 0.10209580008722 | bayes_pls_golite062009 |
